BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024691
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37903.3| unnamed protein product [Vitis vinifera]              164   5e-39
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   164   5e-39
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   160   8e-38
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   135   5e-30
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   135   5e-30

>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  164 bits (416), Expect = 5e-39
 Identities = 79/133 (59%), Positives = 100/133 (75%)
 Frame = +2

Query: 2   SGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIV 181
           +G+G +AL+LF++MM+  +RPDQFTF             KHGKQIH+YL+R  F+PN IV
Sbjct: 302 NGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIV 361

Query: 182 VSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHMQRLG 361
           VS+LIDMYSKCGSLG+GR VFD M +KLD+VLWNT++S LAQHG G+E I +   M R G
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421

Query: 362 TKPNRITLVVILN 400
            KP++IT VVILN
Sbjct: 422 AKPDKITFVVILN 434



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/115 (31%), Positives = 57/115 (49%)
 Frame = +2

Query: 5   GLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIVV 184
           G   EAL+ +SE    GI+ + F+F                +Q+H  ++   F  N ++ 
Sbjct: 171 GYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLS 230

Query: 185 SSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHM 349
           SS++D Y KCG +G  R +FD+M  + D++ W TM+S  A+ G       LF  M
Sbjct: 231 SSVLDAYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYAKWGDMKSANELFVEM 284


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  164 bits (416), Expect = 5e-39
 Identities = 79/133 (59%), Positives = 100/133 (75%)
 Frame = +2

Query: 2   SGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIV 181
           +G+G +AL+LF++MM+  +RPDQFTF             KHGKQIH+YL+R  F+PN IV
Sbjct: 302 NGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIV 361

Query: 182 VSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHMQRLG 361
           VS+LIDMYSKCGSLG+GR VFD M +KLD+VLWNT++S LAQHG G+E I +   M R G
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421

Query: 362 TKPNRITLVVILN 400
            KP++IT VVILN
Sbjct: 422 AKPDKITFVVILN 434



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/115 (31%), Positives = 57/115 (49%)
 Frame = +2

Query: 5   GLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIVV 184
           G   EAL+ +SE    GI+ + F+F                +Q+H  ++   F  N ++ 
Sbjct: 171 GYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLS 230

Query: 185 SSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHM 349
           SS++D Y KCG +G  R +FD+M  + D++ W TM+S  A+ G       LF  M
Sbjct: 231 SSVLDAYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYAKWGDMKSANELFVEM 284


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/131 (61%), Positives = 94/131 (71%)
 Frame = +2

Query: 8   LGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIVVS 187
           LG +AL+LF++MM   IRPDQFTF              HGKQIH YLIR   +PN IVVS
Sbjct: 295 LGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVS 354

Query: 188 SLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHMQRLGTK 367
           SLIDMYSKCG L VGR VFD M DK D+VLWNT++S+LAQHG G E I +F  M RLG K
Sbjct: 355 SLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMK 414

Query: 368 PNRITLVVILN 400
           P+RITL+V+LN
Sbjct: 415 PDRITLIVLLN 425



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
 Frame = +2

Query: 2   SGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIV 181
           SG   +AL+ + E+   GI  ++++F             +  KQ H  ++   F  N ++
Sbjct: 161 SGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVI 220

Query: 182 VSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQ------------------ 307
            SS++D Y+KC  +G  R +FD+M  + D++ W TM+S  AQ                  
Sbjct: 221 SSSVLDAYAKCSEMGDARRLFDEMIIR-DVLAWTTMVSGYAQWGDVEAARELFDLMPEKN 279

Query: 308 -------------HGLGDECIHLFHHMQRLGTKPNRIT 382
                        H LG + + LF  M  L  +P++ T
Sbjct: 280 PVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFT 317


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  135 bits (339), Expect = 5e-30
 Identities = 68/133 (51%), Positives = 88/133 (66%)
 Frame = +2

Query: 2   SGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIV 181
           + LG EAL  F++MM  GI P+Q+TF             KHGKQ+H YLIR  F+ N IV
Sbjct: 305 NSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIV 364

Query: 182 VSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHMQRLG 361
           VSSLIDMYSKCG L     VF  M +K D+V+WNTM+S LAQ+G G++ + +F+ M   G
Sbjct: 365 VSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424

Query: 362 TKPNRITLVVILN 400
            KP+RIT +VIL+
Sbjct: 425 LKPDRITFIVILS 437



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/111 (30%), Positives = 56/111 (50%)
 Frame = +2

Query: 17  EALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIVVSSLI 196
           EA+ L+ +     +  + F+F             +  KQ+H  ++   F  N ++ SS++
Sbjct: 178 EAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIV 237

Query: 197 DMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHM 349
           D YSKCG +   R++FD+M  K DI  W T++S  A+ G  +    LFH M
Sbjct: 238 DAYSKCGEMRCARTLFDEMLVK-DIHAWTTIVSGYAKWGDMNSASELFHQM 287


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  135 bits (339), Expect = 5e-30
 Identities = 68/133 (51%), Positives = 88/133 (66%)
 Frame = +2

Query: 2   SGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIV 181
           + LG EAL  F++MM  GI P+Q+TF             KHGKQ+H YLIR  F+ N IV
Sbjct: 305 NSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIV 364

Query: 182 VSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHMQRLG 361
           VSSLIDMYSKCG L     VF  M +K D+V+WNTM+S LAQ+G G++ + +F+ M   G
Sbjct: 365 VSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424

Query: 362 TKPNRITLVVILN 400
            KP+RIT +VIL+
Sbjct: 425 LKPDRITFIVILS 437



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/111 (29%), Positives = 56/111 (50%)
 Frame = +2

Query: 17  EALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXXKHGKQIHSYLIRRVFKPNAIVVSSLI 196
           EA+ L+ +     +  + F+F             +  KQ+H  ++   F  N ++ SS++
Sbjct: 178 EAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIV 237

Query: 197 DMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQHGLGDECIHLFHHM 349
           D Y+KCG +   R++FD+M  K DI  W T++S  A+ G  +    LFH M
Sbjct: 238 DAYAKCGEMRCARTLFDEMLVK-DIHAWTTIVSGYAKWGDMNSASELFHQM 287