BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024672
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21655.3| unnamed protein product [Vitis vinifera]              154   7e-36
ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog ...   154   7e-36
ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp....   145   4e-33
ref|NP_201257.2| DNA repair protein XRCC2-like protein [Arabidop...   142   4e-32
dbj|BAB11419.1| unnamed protein product [Arabidopsis thaliana]        142   4e-32

>emb|CBI21655.3| unnamed protein product [Vitis vinifera]
          Length = 325

 Score =  154 bits (389), Expect = 7e-36
 Identities = 76/122 (62%), Positives = 93/122 (76%), Gaps = 7/122 (5%)
 Frame = -3

Query: 346 GPSPSAKTQVLIQAAINCILPKEWKGVNYGGLERLVMYIDLDCRFDIQRLSDSLKHHI-- 173
           GPSPSAKTQ+LIQAA+ CILPKEW+GV+YGGLE LVM+IDLDCRFDI  LS SLKH +  
Sbjct: 32  GPSPSAKTQILIQAAVYCILPKEWRGVHYGGLEHLVMFIDLDCRFDILCLSQSLKHRLME 91

Query: 172 -----NQPNEFRNEDLLKRNSTTSTSVFDDELYLSCMRRFLYVRCYNSLEFLATLKTLRF 8
                N+ N  +N+D     +      +D+EL+ +CMRRFLY+RCY+S EFLATLKTLR+
Sbjct: 92  TSGSGNKVNWEQNDDPWGSGTEEPNIGYDEELFAACMRRFLYIRCYDSFEFLATLKTLRY 151

Query: 7   RL 2
           RL
Sbjct: 152 RL 153


>ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog [Vitis vinifera]
          Length = 315

 Score =  154 bits (389), Expect = 7e-36
 Identities = 76/122 (62%), Positives = 93/122 (76%), Gaps = 7/122 (5%)
 Frame = -3

Query: 346 GPSPSAKTQVLIQAAINCILPKEWKGVNYGGLERLVMYIDLDCRFDIQRLSDSLKHHI-- 173
           GPSPSAKTQ+LIQAA+ CILPKEW+GV+YGGLE LVM+IDLDCRFDI  LS SLKH +  
Sbjct: 47  GPSPSAKTQILIQAAVYCILPKEWRGVHYGGLEHLVMFIDLDCRFDILCLSQSLKHRLME 106

Query: 172 -----NQPNEFRNEDLLKRNSTTSTSVFDDELYLSCMRRFLYVRCYNSLEFLATLKTLRF 8
                N+ N  +N+D     +      +D+EL+ +CMRRFLY+RCY+S EFLATLKTLR+
Sbjct: 107 TSGSGNKVNWEQNDDPWGSGTEEPNIGYDEELFAACMRRFLYIRCYDSFEFLATLKTLRY 166

Query: 7   RL 2
           RL
Sbjct: 167 RL 168


>ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310742|gb|EFH41166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 389

 Score =  145 bits (365), Expect = 4e-33
 Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 10/125 (8%)
 Frame = -3

Query: 346 GPSPSAKTQVLIQAAINCILPKEWKGVNYGGLERLVMYIDLDCRFDIQRLSDSLKHHINQ 167
           G SPSAKTQ+LIQAAI+CILPK W G++YGGL +LV+++DLDCRFD+ RLS  LKH + Q
Sbjct: 50  GASPSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQ 109

Query: 166 PN----------EFRNEDLLKRNSTTSTSVFDDELYLSCMRRFLYVRCYNSLEFLATLKT 17
            N          E  N    K       +VFD+ELY+SCM+RFLYVRCY+SLE L++LKT
Sbjct: 110 ANRLGNGAWWQLEESNVKSCKSAQEKPKTVFDEELYVSCMKRFLYVRCYDSLELLSSLKT 169

Query: 16  LRFRL 2
           L +R+
Sbjct: 170 LHYRI 174


>ref|NP_201257.2| DNA repair protein XRCC2-like protein [Arabidopsis thaliana]
           gi|332010527|gb|AED97910.1| DNA repair protein
           XRCC2-like protein [Arabidopsis thaliana]
          Length = 342

 Score =  142 bits (357), Expect = 4e-32
 Identities = 70/125 (56%), Positives = 89/125 (71%), Gaps = 10/125 (8%)
 Frame = -3

Query: 346 GPSPSAKTQVLIQAAINCILPKEWKGVNYGGLERLVMYIDLDCRFDIQRLSDSLKHHINQ 167
           G S SAKTQ+LIQAAI+CILPK W G++YGGL +LV+++DLDCRFD+ RLS  LKH + Q
Sbjct: 50  GASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQ 109

Query: 166 PN----------EFRNEDLLKRNSTTSTSVFDDELYLSCMRRFLYVRCYNSLEFLATLKT 17
            N          E  N    K     + +VFD+ELY SCM+RFLYVRCY+SLE L++LKT
Sbjct: 110 ANWLGNGAWWQLEESNVKSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKT 169

Query: 16  LRFRL 2
           L +R+
Sbjct: 170 LHYRI 174


>dbj|BAB11419.1| unnamed protein product [Arabidopsis thaliana]
          Length = 403

 Score =  142 bits (357), Expect = 4e-32
 Identities = 70/125 (56%), Positives = 89/125 (71%), Gaps = 10/125 (8%)
 Frame = -3

Query: 346 GPSPSAKTQVLIQAAINCILPKEWKGVNYGGLERLVMYIDLDCRFDIQRLSDSLKHHINQ 167
           G S SAKTQ+LIQAAI+CILPK W G++YGGL +LV+++DLDCRFD+ RLS  LKH + Q
Sbjct: 50  GASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQ 109

Query: 166 PN----------EFRNEDLLKRNSTTSTSVFDDELYLSCMRRFLYVRCYNSLEFLATLKT 17
            N          E  N    K     + +VFD+ELY SCM+RFLYVRCY+SLE L++LKT
Sbjct: 110 ANWLGNGAWWQLEESNVKSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKT 169

Query: 16  LRFRL 2
           L +R+
Sbjct: 170 LHYRI 174