BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024671
         (606 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...   117   2e-24
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]               117   2e-24
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...   117   2e-24
gb|ABW74566.1| integrase [Boechera divaricarpa]                       115   5e-24
gb|ABR67407.1| integrase [Cucumis melo subsp. melo]                   115   8e-24

>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
          Length = 1334

 Score =  117 bits (293), Expect = 2e-24
 Identities = 50/98 (51%), Positives = 74/98 (75%)
 Frame = +3

Query: 132  CQLLWLRGILESLKHKQKDATTLFCDNNSTISITKNPVLHGRTKHIRIRFHFLRELVNKG 311
            CQ +WLR +LE +  +Q+  T +FCDN+STI ++KNPVLHGR+KHI +R+HFLRELV +G
Sbjct: 1235 CQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEG 1294

Query: 312  EIRMEYCKTNEQLADIFTKALGGQAFKQNLESLGSKSK 425
             IR++YC T +Q+ADI TKA+  + F++    +G + +
Sbjct: 1295 TIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRR 1332


>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
          Length = 1207

 Score =  117 bits (293), Expect = 2e-24
 Identities = 50/98 (51%), Positives = 74/98 (75%)
 Frame = +3

Query: 132  CQLLWLRGILESLKHKQKDATTLFCDNNSTISITKNPVLHGRTKHIRIRFHFLRELVNKG 311
            CQ +WLR +LE +  +Q+  T +FCDN+STI ++KNPVLHGR+KHI +R+HFLRELV +G
Sbjct: 1108 CQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEG 1167

Query: 312  EIRMEYCKTNEQLADIFTKALGGQAFKQNLESLGSKSK 425
             IR++YC T +Q+ADI TKA+  + F++    +G + +
Sbjct: 1168 TIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRR 1205


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
            gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1334

 Score =  117 bits (293), Expect = 2e-24
 Identities = 50/98 (51%), Positives = 74/98 (75%)
 Frame = +3

Query: 132  CQLLWLRGILESLKHKQKDATTLFCDNNSTISITKNPVLHGRTKHIRIRFHFLRELVNKG 311
            CQ +WLR +LE +  +Q+  T +FCDN+STI ++KNPVLHGR+KHI +R+HFLRELV +G
Sbjct: 1235 CQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEG 1294

Query: 312  EIRMEYCKTNEQLADIFTKALGGQAFKQNLESLGSKSK 425
             IR++YC T +Q+ADI TKA+  + F++    +G + +
Sbjct: 1295 TIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRR 1332


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  115 bits (289), Expect = 5e-24
 Identities = 51/94 (54%), Positives = 67/94 (71%)
 Frame = +3

Query: 132  CQLLWLRGILESLKHKQKDATTLFCDNNSTISITKNPVLHGRTKHIRIRFHFLRELVNKG 311
            CQ +WLR IL  +K +Q+ ATT+FCDN +TI++ KNP  HGRTKHI I+ HF+R+LV++G
Sbjct: 1060 CQAVWLRRILADIKQEQEKATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIRDLVSEG 1119

Query: 312  EIRMEYCKTNEQLADIFTKALGGQAFKQNLESLG 413
             + +EYC TNEQ AD+ TKAL    F      LG
Sbjct: 1120 SVTLEYCSTNEQSADVLTKALSRNKFDYFRSKLG 1153


>gb|ABR67407.1| integrase [Cucumis melo subsp. melo]
          Length = 1281

 Score =  115 bits (287), Expect = 8e-24
 Identities = 50/81 (61%), Positives = 66/81 (81%)
 Frame = +3

Query: 129  GCQLLWLRGILESLKHKQKDATTLFCDNNSTISITKNPVLHGRTKHIRIRFHFLRELVNK 308
            GCQ LWLR +L+ LK  QK  T LFCDN S I+++KNPV HGR+KHIRI++HF+++LV  
Sbjct: 1183 GCQALWLRWMLKELKCTQKCETVLFCDNGSAIALSKNPVFHGRSKHIRIKYHFIKDLVKD 1242

Query: 309  GEIRMEYCKTNEQLADIFTKA 371
            GE+ ++YCKT +Q+ADIFTKA
Sbjct: 1243 GEVIVKYCKTQDQVADIFTKA 1263