BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024662
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...    83   3e-14
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2...    83   3e-14
emb|CBI32760.3| unnamed protein product [Vitis vinifera]               70   1e-10
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...    69   3e-10
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...    61   8e-08

>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 548

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +2

Query: 101 PLFLPKAHLRNXXXXXXXXXXX-VTMLHEQATPAVTSVPTASITRNFPTSILLQEQRDEF 277
           P F  + H +N            V MLHEQA PAVTS PT SI RNFPTS+LLQEQRDEF
Sbjct: 12  PPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQRDEF 71

Query: 278 RPLLH-FNDDKMSQVTPEKRYTESGPS 355
           RPLL+ F +DK  Q T + +  + G S
Sbjct: 72  RPLLNIFKEDKTFQATVDTKQMDPGTS 98


>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
           predicted protein [Populus trichocarpa]
          Length = 535

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
 Frame = +2

Query: 74  MEATGRQLL---PLFLPKAHLRNXXXXXXXXXXXVTMLHEQATPAVTSVPTASITRNFPT 244
           MEA GR LL   P F  + HL+N           V +L EQATPAV+S+PT S  ++FPT
Sbjct: 1   MEA-GRTLLSSSPSFPTRTHLKNSLTSS------VLILREQATPAVSSIPTTSTAQHFPT 53

Query: 245 SILLQEQRDEFRPLLH-FNDDKMSQVTPEKRYTESGPS 355
           S+LLQEQRDEFRPL + F +D+ SQ T ++R TE G S
Sbjct: 54  SVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTS 91


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +2

Query: 101 PLFLPKAHLRNXXXXXXXXXXXVTMLHEQATPAVTSVPTASITRNFPTSILLQEQRDEFR 280
           P F P+ H RN           V MLH+Q  PAV S+PT +I R FPTS+LLQEQRDE+R
Sbjct: 12  PSFPPRTHFRNSSSS-------VLMLHDQVAPAVASIPT-TIARKFPTSVLLQEQRDEYR 63

Query: 281 PLLH-FNDDKMSQVTPEKRYTESGPSFCEE 367
           P      D++  Q T EKR  E   S  EE
Sbjct: 64  PFPQALKDERTFQATLEKRQMEIVVSADEE 93


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 43/94 (45%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
 Frame = +2

Query: 101 PLFLPKAHLRNXXXXXXXXXXXVT----MLHEQATPAVTSVPTASITRNFPTSILLQEQR 268
           P F P+ H RN           V     MLH+Q  PAV S+PT +I R FPTS+LLQEQR
Sbjct: 12  PSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPT-TIARKFPTSVLLQEQR 70

Query: 269 DEFRPLLH-FNDDKMSQVTPEKRYTESGPSFCEE 367
           DE+RP      D++  Q T EKR  E   S  EE
Sbjct: 71  DEYRPFPQALKDERTFQATLEKRQMEIVVSADEE 104


>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 101 PLFLPKAHLRNXXXXXXXXXXXVTMLHEQATPAVTSVPTASITRNFPTSILLQEQRDEFR 280
           P F P+ H              V MLHEQA+P V S  +    +NFP S+LL EQRDE+R
Sbjct: 12  PPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYR 71

Query: 281 PLLHFN-DDKMSQVTPEKRYTES 346
           PLLH + +DK SQ     R  ++
Sbjct: 72  PLLHMSKEDKTSQAMLSTRQMDT 94