BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024661
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                125   3e-27
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             121   5e-26
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   120   9e-26
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     116   2e-24
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   114   8e-24

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  125 bits (315), Expect = 3e-27
 Identities = 61/138 (44%), Positives = 88/138 (63%)
 Frame = +3

Query: 3    HVLWAYRTTPRTSTKESPFAMAYGVEAVIPVEMIEKTTRTRAVESGLNEKILAIELNVIK 182
            HVLWAYRTTPR ST E+PF+M YG+EAVIP+E+   T +     +  N  +L   LN I+
Sbjct: 952  HVLWAYRTTPRRSTGETPFSMTYGMEAVIPLELGFPTLKFDQYNNVTNHDMLHDSLNTIE 1011

Query: 183  EKRDIARMRLEEYHRKLQRQYGRRLKPRAFMIGDLVLRRVTPATKKENDGKLGPNWEGPY 362
            E+R++A +++  Y +KL++ Y + +K R  + GDLVLR+V    +    GKLG NWEGPY
Sbjct: 1012 ERREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGPY 1071

Query: 363  VVKEKGTAGTYKIETPEG 416
             +      G Y++E  +G
Sbjct: 1072 RITSVAGIGAYRLEDLDG 1089


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  121 bits (304), Expect = 5e-26
 Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
 Frame = +3

Query: 6    VLWAYRTTPRTSTKESPFAMAYGVEAVIPVEMIEKTTRTRAVESGLNEK----ILAIELN 173
            VLWAYRTTPR  T E+PF++ YG+EAV+P E+       R  E+ LNE+    +L   L+
Sbjct: 948  VLWAYRTTPRRPTGETPFSLVYGMEAVVPAEL--NVPGLRRTEAPLNEEENSAMLNDSLD 1005

Query: 174  VIKEKRDIARMRLEEYHRKLQRQYGRRLKPRAFMIGDLVLRRVTPATKKENDGKLGPNWE 353
             I E+RD A +R++ Y +   R Y  ++K R F +GD VLRRV    K+E  GKLG NWE
Sbjct: 1006 TINERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWE 1065

Query: 354  GPYVVKEKGTAGTYKIETPE 413
            GPY++ E    G Y+++  E
Sbjct: 1066 GPYIITEVVRNGVYRLKDLE 1085


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  120 bits (302), Expect = 9e-26
 Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
 Frame = +3

Query: 6    VLWAYRTTPRTSTKESPFAMAYGVEAVIPVEMIEKTTRTRAVESGLNEK----ILAIELN 173
            VLWAYRTTPR ST E+PF++ YG++AV+P E+       R  E+ LNEK    +L   L+
Sbjct: 1131 VLWAYRTTPRRSTGETPFSLVYGMKAVVPAEL--NVPGLRRTEAPLNEKENSAMLDDSLD 1188

Query: 174  VIKEKRDIARMRLEEYHRKLQRQYGRRLKPRAFMIGDLVLRRVTPATKKENDGKLGPNWE 353
             I E+RD A ++++ Y     R Y  ++K R F +GD VL+RV    K+E  GKLG NWE
Sbjct: 1189 TINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWE 1248

Query: 354  GPYVVKEKGTAGTYKIETPE 413
            GPY+V E    G Y+++  E
Sbjct: 1249 GPYIVTEVVRNGVYRLKDLE 1268


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  116 bits (290), Expect = 2e-24
 Identities = 58/137 (42%), Positives = 81/137 (59%)
 Frame = +3

Query: 6    VLWAYRTTPRTSTKESPFAMAYGVEAVIPVEMIEKTTRTRAVESGLNEKILAIELNVIKE 185
            VLW+ RTT + +T  SPF + YG EAV+P+E +  T RT       NE+ L   L++++E
Sbjct: 1154 VLWSLRTTEKEATGYSPFHLVYGSEAVLPIEAVVPTFRTATFNPVENEEGLKASLDLVEE 1213

Query: 186  KRDIARMRLEEYHRKLQRQYGRRLKPRAFMIGDLVLRRVTPATKKENDGKLGPNWEGPYV 365
             RD AR+ L  Y  +++R Y  R+  R   +GDLVLR+ T   K    GK+  NWEGPY 
Sbjct: 1214 SRDTARLNLAVYQNRMRRAYNHRVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGPYK 1273

Query: 366  VKEKGTAGTYKIETPEG 416
            V E+   GTY++   EG
Sbjct: 1274 VVEEMRPGTYRLTDMEG 1290


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
 Frame = +3

Query: 6    VLWAYRTTPRTSTKESPFAMAYGVEAVIPVEMIEKTTRTRAV--ESGLNEKILAIELNVI 179
            VLW+YRTTPR ST  +PF++ YG+EA+ P E    T R   +  +  LN+++L   L+ +
Sbjct: 1632 VLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTL 1691

Query: 180  KEKRDIARMRLEEYHRKLQRQYGRRLKPRAFMIGDLVLRRVTPATKKENDGKLGPNWEGP 359
            +E+RD A +R++ Y +   + Y +++K R F  GDLVLR+V   T +++ GKLG +WEGP
Sbjct: 1692 EEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGP 1751

Query: 360  YVVKEKGTAGTYKIETPEG 416
            Y++ +    G Y++ T +G
Sbjct: 1752 YLISKVVKPGVYELLTMDG 1770