BLASTX nr result

ID: Coptis23_contig00024541 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024541
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517624.1| DNA binding protein, putative [Ricinus commu...   110   1e-22
ref|XP_002285107.1| PREDICTED: ethylene-responsive transcription...   108   6e-22
ref|XP_002524500.1| DNA binding protein, putative [Ricinus commu...   108   6e-22
ref|XP_002324652.1| AP2/ERF domain-containing transcription fact...   108   6e-22
ref|XP_003609337.1| Ethylene-responsive transcription factor WIN...   104   7e-21

>ref|XP_002517624.1| DNA binding protein, putative [Ricinus communis]
           gi|223543256|gb|EEF44788.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 189

 Score =  110 bits (275), Expect = 1e-22
 Identities = 55/86 (63%), Positives = 62/86 (72%)
 Frame = +3

Query: 3   APSPSLTCLRLDTENSHIGVWQKRAGASSDSNWVMQVELSKKNGQASXXXXXXXXXXXVS 182
           +PSPSLTCLRLDTEN HIGVWQKRAG+  DSNWVM VEL KK GQA            ++
Sbjct: 104 SPSPSLTCLRLDTENCHIGVWQKRAGSRPDSNWVMIVELGKKGGQAPEPKLPSVAAPEIA 163

Query: 183 QANAGGGMEEEDRIALQMIEELLCRN 260
           Q   G G+++E RIALQMIEELL RN
Sbjct: 164 QEGDGEGLDDEQRIALQMIEELLNRN 189


>ref|XP_002285107.1| PREDICTED: ethylene-responsive transcription factor SHINE 3-like
           [Vitis vinifera]
          Length = 194

 Score =  108 bits (269), Expect = 6e-22
 Identities = 55/88 (62%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   PSPSLTCLRLDTENSHIGVWQKRAGASSDSNWVMQVELSKKNGQASXXXXXXXXXXXVSQ 185
           PSPSLTCLRLDT+NSH+GVWQKRAG  S S+WVM+VEL KK+GQ S              
Sbjct: 107 PSPSLTCLRLDTDNSHLGVWQKRAGTRSGSSWVMRVELGKKDGQVSDENSSSFLRSPRGG 166

Query: 186 ANAGGGME-EEDRIALQMIEELLCRNCP 266
           A AG G++ EEDR+A+QMIEELL  NCP
Sbjct: 167 AEAGDGVDGEEDRMAMQMIEELLNWNCP 194


>ref|XP_002524500.1| DNA binding protein, putative [Ricinus communis]
           gi|223536288|gb|EEF37940.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 229

 Score =  108 bits (269), Expect = 6e-22
 Identities = 61/114 (53%), Positives = 69/114 (60%), Gaps = 12/114 (10%)
 Frame = +3

Query: 6   PSPSLTCLRLDTENSHIGVWQKRAGASSDSNWVMQVELSKKNGQASXXXXXXXXXXXV-- 179
           PSPS+TCLRLDTENSHIGVWQKRAG  SDSNWVM V+L K+N + S              
Sbjct: 114 PSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVQLGKQNHEVSEGTFPMAESSNTLP 173

Query: 180 SQANAGGGMEEEDRIALQMIEELLCRNCPSPA----------TSNDEFLGEGSF 311
                   M+EE+RIALQMIEELL RNCPSP             +D+  G GSF
Sbjct: 174 GPPELRTQMDEEERIALQMIEELLNRNCPSPPFEVQDGDDEDDDDDDDDGSGSF 227


>ref|XP_002324652.1| AP2/ERF domain-containing transcription factor [Populus
           trichocarpa] gi|222866086|gb|EEF03217.1| AP2/ERF
           domain-containing transcription factor [Populus
           trichocarpa]
          Length = 206

 Score =  108 bits (269), Expect = 6e-22
 Identities = 59/103 (57%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
 Frame = +3

Query: 3   APSPSLTCLRLDTENSHIGVWQKRAGASSDSNWVMQVELSKKNGQAS-XXXXXXXXXXXV 179
           APSPS+TCLRLDTENS IGVWQKRAG  SDSNWVM+V+L ++  Q S            V
Sbjct: 102 APSPSMTCLRLDTENSLIGVWQKRAGERSDSNWVMRVQLGQRESQVSESTLPLPQSSGGV 161

Query: 180 SQANAGGGMEEEDRIALQMIEELLCRNCPSPATSNDEFLGEGS 308
           S+      M E++RIALQMIEELL RNCPSP+    +  G+GS
Sbjct: 162 SEPELRAEMGEDERIALQMIEELLNRNCPSPSFGVQDH-GDGS 203


>ref|XP_003609337.1| Ethylene-responsive transcription factor WIN1 [Medicago truncatula]
           gi|355510392|gb|AES91534.1| Ethylene-responsive
           transcription factor WIN1 [Medicago truncatula]
          Length = 214

 Score =  104 bits (260), Expect = 7e-21
 Identities = 56/99 (56%), Positives = 67/99 (67%), Gaps = 6/99 (6%)
 Frame = +3

Query: 6   PSPSLTCLRLDTENSHIGVWQKRAGASSDSNWVMQVELSKK-----NGQASXXXXXXXXX 170
           PSPS+TCLRLDTENSHIGVWQKRAG  S+SNWVM V+L KK     +  +S         
Sbjct: 103 PSPSMTCLRLDTENSHIGVWQKRAGKCSESNWVMTVQLGKKMSVTQDSGSSSSSVAPSSA 162

Query: 171 XXVSQANAGGGMEEEDRIALQMIEELL-CRNCPSPATSN 284
               +    G ++EEDRIALQMIEELL  +NCPSP+ +N
Sbjct: 163 VATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINN 201


Top