BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024540
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    74   1e-11
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...    66   3e-09
dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis th...    66   3e-09
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]     66   3e-09
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                     66   3e-09

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/98 (36%), Positives = 52/98 (53%)
 Frame = -1

Query: 295 RILFQGQTKNGLYPXXXXXXXXXXXXSPTALLSNKASSSIWHSRLGHPVTPIFHKLLQTR 116
           RIL QG  +NGLYP              +  +  +A++  WHSRLGHP + IF+ L  + 
Sbjct: 420 RILLQGVVENGLYPLAGCKTFHKSLTCLSTTIGVRANADTWHSRLGHPSSVIFNSLFHSN 479

Query: 115 CIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPL 2
            + V+  S    FC+ C +GK  +LPF  S  +S+ PL
Sbjct: 480 KLSVKGSSTKLEFCSACQLGKAKQLPFPESSRQSSVPL 517


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
           gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1466

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = -1

Query: 289 LFQGQTKNGLYPXXXXXXXXXXXXSPTALL---SNKASSSIWHSRLGHPVTPIFHKLLQT 119
           L QG+TK+ LY              P +L    S+KA+ S WH+RLGHP   I + ++  
Sbjct: 432 LLQGKTKDELYEWPIASSQ------PVSLFASPSSKATHSSWHARLGHPAPSILNSVISN 485

Query: 118 RCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPL 2
             + V + S  F  C+DC++ K  K+PF+ S   ST PL
Sbjct: 486 YSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPL 524


>dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis thaliana]
          Length = 847

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = -1

Query: 289 LFQGQTKNGLYPXXXXXXXXXXXXSPTALL---SNKASSSIWHSRLGHPVTPIFHKLLQT 119
           L QG+TK+ LY              P +L    S+KA+ S WH+RLGHP   I + ++  
Sbjct: 397 LLQGKTKDELYEWPIASSQ------PVSLFASPSSKATHSSWHARLGHPAPSILNSVISN 450

Query: 118 RCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPL 2
             + V + S  F  C+DC++ K  K+PF+ S   ST PL
Sbjct: 451 YSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPL 489


>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
          Length = 1048

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = -1

Query: 289 LFQGQTKNGLYPXXXXXXXXXXXXSPTALL---SNKASSSIWHSRLGHPVTPIFHKLLQT 119
           L QG+TK+ LY              P +L    S+KA+ S WH+RLGHP   I + ++  
Sbjct: 427 LLQGKTKDELYEWPIASSQ------PVSLFASPSSKATHSSWHARLGHPAPSILNSVISN 480

Query: 118 RCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPL 2
             + V + S  F  C+DC++ K  K+PF+ S   ST PL
Sbjct: 481 YSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPL 519


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = -1

Query: 289 LFQGQTKNGLYPXXXXXXXXXXXXSPTALL---SNKASSSIWHSRLGHPVTPIFHKLLQT 119
           L QG+TK+ LY              P +L    S+KA+ S WH+RLGHP   I + ++  
Sbjct: 432 LLQGKTKDELYEWPIASSQ------PVSLFASPSSKATHSSWHARLGHPAPSILNSVISN 485

Query: 118 RCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCESTTPL 2
             + V + S  F  C+DC++ K  K+PF+ S   ST PL
Sbjct: 486 YSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPL 524