BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024534
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ72555.1| putative retroelement polyprotein [Malus x domest...   164   6e-39
gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera]         163   1e-38
emb|CAN74241.1| hypothetical protein VITISV_006638 [Vitis vinifera]   162   2e-38
emb|CBI40600.3| unnamed protein product [Vitis vinifera]              162   4e-38
gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar]           162   4e-38

>gb|AEJ72555.1| putative retroelement polyprotein [Malus x domestica]
          Length = 1249

 Score =  164 bits (416), Expect = 6e-39
 Identities = 80/138 (57%), Positives = 104/138 (75%)
 Frame = +2

Query: 80   SGYRTFVGGNLVTCRSKKQSMVARSSAKAEYRAMAHTASEMLWVRSLLYDFGIRSRQPME 259
            +GY TFVGGNLVT +SKKQS+VARSSA+AEYRAMA T  E++W++ LL D G +   PM 
Sbjct: 1110 TGYCTFVGGNLVTWKSKKQSVVARSSAEAEYRAMASTTCELIWLQGLLNDLGFKRTLPMP 1169

Query: 260  MYCDNQAAIFIANNPVFHERAKHIEVDCHFIRDLSIRKLIATPYVKFEDQ*GDIFTKPLS 439
            ++CDNQAAI+IA+NPVFHER KHIE+DCHF+R+ +   +I   +V+  DQ  DIFTK L 
Sbjct: 1170 LFCDNQAAIYIASNPVFHERTKHIEMDCHFVREKTQSDVIQHVFVRSTDQLADIFTKGLC 1229

Query: 440  RVILNMLCSKLGIFDLYA 493
            RV  N L  +LG+ ++ A
Sbjct: 1230 RVQFNTLLVQLGLMNILA 1247


>gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera]
          Length = 326

 Score =  163 bits (413), Expect = 1e-38
 Identities = 76/140 (54%), Positives = 103/140 (73%)
 Frame = +2

Query: 80  SGYRTFVGGNLVTCRSKKQSMVARSSAKAEYRAMAHTASEMLWVRSLLYDFGIRSRQPME 259
           +GY  F GGNLV  +SKKQS+V+RSSA++EYRAMA    E++W+  LL + G++   P +
Sbjct: 187 TGYCVFFGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAK 246

Query: 260 MYCDNQAAIFIANNPVFHERAKHIEVDCHFIRDLSIRKLIATPYVKFEDQ*GDIFTKPLS 439
           ++CDNQAA+ IA NPV+HER KHIEVDCHFIR+     L++T YVK  +Q GDIFTK L+
Sbjct: 247 LWCDNQAALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALN 306

Query: 440 RVILNMLCSKLGIFDLYAPA 499
              +   C+KLG+ ++YAPA
Sbjct: 307 GTRVEYFCNKLGMINIYAPA 326


>emb|CAN74241.1| hypothetical protein VITISV_006638 [Vitis vinifera]
          Length = 1280

 Score =  162 bits (411), Expect = 2e-38
 Identities = 76/140 (54%), Positives = 103/140 (73%)
 Frame = +2

Query: 80   SGYRTFVGGNLVTCRSKKQSMVARSSAKAEYRAMAHTASEMLWVRSLLYDFGIRSRQPME 259
            +GY  F GGNLV  +SKKQS+V+RSSA++EYRAMA    E++W+  LL + G++   P +
Sbjct: 1141 TGYCVFFGGNLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAK 1200

Query: 260  MYCDNQAAIFIANNPVFHERAKHIEVDCHFIRDLSIRKLIATPYVKFEDQ*GDIFTKPLS 439
            ++CDNQAA+ IA NPV+HER KHIEVDCHFIR+     L++T YVK  +Q GDIFTK L+
Sbjct: 1201 LWCDNQAALHIAVNPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALN 1260

Query: 440  RVILNMLCSKLGIFDLYAPA 499
               +   C+KLG+ ++YAPA
Sbjct: 1261 GTQVEYFCNKLGMINIYAPA 1280


>emb|CBI40600.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score =  162 bits (409), Expect = 4e-38
 Identities = 81/140 (57%), Positives = 100/140 (71%)
 Frame = +2

Query: 80   SGYRTFVGGNLVTCRSKKQSMVARSSAKAEYRAMAHTASEMLWVRSLLYDFGIRSRQPME 259
            +GY  FVGGNLV+ +SKKQ +VARSSA+AEYRAMA  + EM+W+++LL D G     PM+
Sbjct: 813  TGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSPMK 872

Query: 260  MYCDNQAAIFIANNPVFHERAKHIEVDCHFIRDLSIRKLIATPYVKFEDQ*GDIFTKPLS 439
            ++CDNQAA+ IA NPVFHER KHIEVDCHFIR     K+I T Y++  DQ  D FTK LS
Sbjct: 873  LFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKVLS 932

Query: 440  RVILNMLCSKLGIFDLYAPA 499
              + + L  KLG  D  APA
Sbjct: 933  STVFHRLMFKLGSIDPLAPA 952


>gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar]
          Length = 1382

 Score =  162 bits (409), Expect = 4e-38
 Identities = 75/140 (53%), Positives = 103/140 (73%)
 Frame = +2

Query: 80   SGYRTFVGGNLVTCRSKKQSMVARSSAKAEYRAMAHTASEMLWVRSLLYDFGIRSRQPME 259
            +GY  F GGNLV  +SKKQS+V+RSSA++EYRAM+    E++W+  LL + G++   P +
Sbjct: 1243 TGYCVFFGGNLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAK 1302

Query: 260  MYCDNQAAIFIANNPVFHERAKHIEVDCHFIRDLSIRKLIATPYVKFEDQ*GDIFTKPLS 439
            ++CDNQAA+ IA NPV+HER KHIEVDCHFIR+     L++T YVK  +Q GDIFTK L+
Sbjct: 1303 LWCDNQAALHIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALN 1362

Query: 440  RVILNMLCSKLGIFDLYAPA 499
               +   C+KLG+ ++YAPA
Sbjct: 1363 GTRVEYFCNKLGMINIYAPA 1382