BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024464
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like p...    58   9e-07
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    57   2e-06

>gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like protein, related
           [Medicago truncatula]
          Length = 196

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
 Frame = +1

Query: 7   SWKMEGDFTCPLCNTSLEAENHLFFECDWTRILWFTSSLGLRMEIQGRNNTKDW--ISKF 180
           +W  + D  C LC    E  +HLFF CD+   +W      + M +    NT +W  I ++
Sbjct: 69  TWYPKCDQVCVLCTKENETHSHLFFSCDYADAVWKGVMRWMNMTV----NTSNWHSILQY 124

Query: 181 ISWSNNKSQHIAQA-GIQACYLLYNIWKTRNEAKFEQRLPNRERILRRSEMEACNYYKGF 357
           I    N +  + QA  +     LY IWK RN+ KF+    + +++L + +M+A  Y +G 
Sbjct: 125 IQSHCNSNNGMHQAHRMVLSETLYVIWKERNDRKFQNCYRSVQQLLNQIKMDA--YIRGL 182

Query: 358 ATTRMQ 375
              ++Q
Sbjct: 183 QFKKVQ 188


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/122 (29%), Positives = 65/122 (53%)
 Frame = +1

Query: 10   WKMEGDFTCPLCNTSLEAENHLFFECDWTRILWFTSSLGLRMEIQGRNNTKDWISKFISW 189
            W+ +GD  C  C+  +E   HLFF+C   R++W  + +   + ++   + +D    +I  
Sbjct: 876  WR-KGDNKCQFCD-KVETVQHLFFDCPLARLIW--NIIACALNVKPVLSRQDLFGSWIQS 931

Query: 190  SNNKSQHIAQAGIQACYLLYNIWKTRNEAKFEQRLPNRERILRRSEMEACNYYKGFATTR 369
             +  ++++   GI A  +L++IWK RN+A FE++LPN    L      ACN+   +A  +
Sbjct: 932  MDKFTKNLVIVGIAA--VLWSIWKCRNKACFERKLPNDPIEL---VYLACNWVDSWAILQ 986

Query: 370  MQ 375
             Q
Sbjct: 987  KQ 988