BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024452
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   130   1e-28
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
emb|CBI23460.3| unnamed protein product [Vitis vinifera]              121   5e-26
ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   121   7e-26

>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  130 bits (327), Expect = 1e-28
 Identities = 60/124 (48%), Positives = 87/124 (70%)
 Frame = -1

Query: 372 DRKAYHILISMYSYISNKQGVHRSWKSLNSKFPDTTNISYLVMLQALSRLDLAEELEKCF 193
           D +A+ +LI++Y+  SN +GV+R+W+SL    P   N SYL+ML ALS+L     LEKCF
Sbjct: 268 DPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCF 327

Query: 192 REWESSCVYYDIRVTNVLIDSYLGRDMIRKAKMLYEDAMKRGAEPNIRTTEMIMNFYLKN 13
           +EWES C  YD+R++NV+++SYL R+MI +A +L E   KRG E  ++T ++ M FYLK 
Sbjct: 328 KEWESGCSTYDVRLSNVMLESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKK 387

Query: 12  RQMD 1
            Q+D
Sbjct: 388 HQLD 391


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score =  129 bits (323), Expect = 3e-28
 Identities = 59/124 (47%), Positives = 87/124 (70%)
 Frame = -1

Query: 372 DRKAYHILISMYSYISNKQGVHRSWKSLNSKFPDTTNISYLVMLQALSRLDLAEELEKCF 193
           D +A+ +LI++Y+  SN +GV+R+W+SL    P   N SYL+ML ALS+L     LEKCF
Sbjct: 272 DPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCF 331

Query: 192 REWESSCVYYDIRVTNVLIDSYLGRDMIRKAKMLYEDAMKRGAEPNIRTTEMIMNFYLKN 13
           +EWES C  YD+R++NV+++SYL R++I +A +L E   KRG E  ++T ++ M FYLK 
Sbjct: 332 KEWESGCSTYDVRLSNVMLESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKK 391

Query: 12  RQMD 1
            Q+D
Sbjct: 392 HQLD 395


>emb|CBI23460.3| unnamed protein product [Vitis vinifera]
          Length = 444

 Score =  121 bits (304), Expect = 5e-26
 Identities = 60/124 (48%), Positives = 79/124 (63%)
 Frame = -1

Query: 375 RDRKAYHILISMYSYISNKQGVHRSWKSLNSKFPDTTNISYLVMLQALSRLDLAEELEKC 196
           RD  A+  LI++Y  I N   V+R W+SL   FP T N+SYL M+Q L  L      EKC
Sbjct: 261 RDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKC 320

Query: 195 FREWESSCVYYDIRVTNVLIDSYLGRDMIRKAKMLYEDAMKRGAEPNIRTTEMIMNFYLK 16
           FREWES C  YDIRV N LI +Y    ++ KA+ L E A +RGA+PN +T E+ + ++LK
Sbjct: 321 FREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLK 380

Query: 15  NRQM 4
           NR+M
Sbjct: 381 NREM 384


>ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
           [Vitis vinifera]
          Length = 489

 Score =  121 bits (304), Expect = 5e-26
 Identities = 60/124 (48%), Positives = 79/124 (63%)
 Frame = -1

Query: 375 RDRKAYHILISMYSYISNKQGVHRSWKSLNSKFPDTTNISYLVMLQALSRLDLAEELEKC 196
           RD  A+  LI++Y  I N   V+R W+SL   FP T N+SYL M+Q L  L      EKC
Sbjct: 261 RDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKC 320

Query: 195 FREWESSCVYYDIRVTNVLIDSYLGRDMIRKAKMLYEDAMKRGAEPNIRTTEMIMNFYLK 16
           FREWES C  YDIRV N LI +Y    ++ KA+ L E A +RGA+PN +T E+ + ++LK
Sbjct: 321 FREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLK 380

Query: 15  NRQM 4
           NR+M
Sbjct: 381 NREM 384


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  121 bits (303), Expect = 7e-26
 Identities = 59/125 (47%), Positives = 81/125 (64%)
 Frame = -1

Query: 375 RDRKAYHILISMYSYISNKQGVHRSWKSLNSKFPDTTNISYLVMLQALSRLDLAEELEKC 196
           R+R+AYH LIS+Y+   N   V+R W  L S F    N+SYLVMLQAL++L   E + KC
Sbjct: 279 RNREAYHFLISIYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKC 338

Query: 195 FREWESSCVYYDIRVTNVLIDSYLGRDMIRKAKMLYEDAMKRGAEPNIRTTEMIMNFYLK 16
           FREWES C  YD+R+ NV I  +L  DM  +A+++++DA+KR   P  +  E  M F+LK
Sbjct: 339 FREWESGCTNYDMRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLK 398

Query: 15  NRQMD 1
             Q+D
Sbjct: 399 IHQLD 403