BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024442
         (777 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]              427   e-117
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     427   e-117
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2...   423   e-116
dbj|BAF03051.1| DNA ligase IV [Populus nigra]                         419   e-115
ref|XP_002527709.1| DNA ligase IV, putative [Ricinus communis] g...   415   e-114

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  427 bits (1099), Expect = e-117
 Identities = 204/259 (78%), Positives = 230/259 (88%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  YGSGRRGGEVAQFLVGLAERSAPNIYPRRFISFCRVGTGLSDDELDALVTKLKPYLRKNE 597
            YGSGRRGGEVAQFLVGLA+ S P+ YPRRFISFCRVGTGLSDDELDA+VTKLKPY RKNE
Sbjct: 461  YGSGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNE 520

Query: 596  YPKRTP-SFYEVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEAFAAPYCLRFPRIDR 420
            YPK+ P SFY+VTNNSKERPD+WI+SPEKSIILSITSDIRTIRSE FAAPY LRFPRID 
Sbjct: 521  YPKKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDC 580

Query: 419  VRYDKPWHECLDVQSFVDLVHSSNGNTQRGMGYGDFQENKPKRIKASSKGDKKIFSVVPS 240
            VRYDKPWHECLDVQSF++LVHSSNG TQRG  YG  Q++KPKR+K+S KG++K   VVPS
Sbjct: 581  VRYDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPS 640

Query: 239  HFIKTDVSGVKEATCMFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIA 60
            HF++TDV+ VK  T +F+NMMFYF+N PP  SLDS HK+V ENGG+FSMNLN+SVTHC+A
Sbjct: 641  HFMQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVA 700

Query: 59   AERKGIKYQAAKLRRDIIH 3
            A+ KGIKYQAAKLR DIIH
Sbjct: 701  AQSKGIKYQAAKLRGDIIH 719


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  427 bits (1099), Expect = e-117
 Identities = 204/259 (78%), Positives = 230/259 (88%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  YGSGRRGGEVAQFLVGLAERSAPNIYPRRFISFCRVGTGLSDDELDALVTKLKPYLRKNE 597
            YGSGRRGGEVAQFLVGLA+ S P+ YPRRFISFCRVGTGLSDDELDA+VTKLKPY RKNE
Sbjct: 460  YGSGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNE 519

Query: 596  YPKRTP-SFYEVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEAFAAPYCLRFPRIDR 420
            YPK+ P SFY+VTNNSKERPD+WI+SPEKSIILSITSDIRTIRSE FAAPY LRFPRID 
Sbjct: 520  YPKKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDC 579

Query: 419  VRYDKPWHECLDVQSFVDLVHSSNGNTQRGMGYGDFQENKPKRIKASSKGDKKIFSVVPS 240
            VRYDKPWHECLDVQSF++LVHSSNG TQRG  YG  Q++KPKR+K+S KG++K   VVPS
Sbjct: 580  VRYDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPS 639

Query: 239  HFIKTDVSGVKEATCMFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIA 60
            HF++TDV+ VK  T +F+NMMFYF+N PP  SLDS HK+V ENGG+FSMNLN+SVTHC+A
Sbjct: 640  HFMQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVA 699

Query: 59   AERKGIKYQAAKLRRDIIH 3
            A+ KGIKYQAAKLR DIIH
Sbjct: 700  AQSKGIKYQAAKLRGDIIH 718


>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
            predicted protein [Populus trichocarpa]
          Length = 1242

 Score =  423 bits (1088), Expect = e-116
 Identities = 204/259 (78%), Positives = 229/259 (88%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  YGSGRRGGEVAQFLVGLAERSAPNIYPRRFISFCRVGTGLSDDELDALVTKLKPYLRKNE 597
            YGSGRRGGEVAQFL+GLAER A N YPRRFISFCRVG GLSD+ELD +V+KLKPY RKNE
Sbjct: 469  YGSGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNE 528

Query: 596  YPKRTP-SFYEVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEAFAAPYCLRFPRIDR 420
            YPK +P SFY+VTNNSKERPDVWIE+P+KSIILSITSDIRTI SE F+APY LRFPRIDR
Sbjct: 529  YPKNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDR 588

Query: 419  VRYDKPWHECLDVQSFVDLVHSSNGNTQRGMGYGDFQENKPKRIKASSKGDKKIFSVVPS 240
            VRYDKPWHECLDVQSFV+LVHSSNG TQ+G GYG  Q++KP  IK+S KG+KK  SVVPS
Sbjct: 589  VRYDKPWHECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPS 648

Query: 239  HFIKTDVSGVKEATCMFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIA 60
            H I+TD+S +K  T +F+NMMFYF+NVPP+ SL+S HKMVAENGG+FSMNLN+SVTHCIA
Sbjct: 649  HLIQTDISDIKGETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIA 708

Query: 59   AERKGIKYQAAKLRRDIIH 3
            AE KGIKYQAAKL  DIIH
Sbjct: 709  AESKGIKYQAAKLHGDIIH 727


>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
          Length = 1319

 Score =  419 bits (1077), Expect = e-115
 Identities = 202/259 (77%), Positives = 228/259 (88%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  YGSGRRGGEVAQFLVGLAERSAPNIYPRRFISFCRVGTGLSDDELDALVTKLKPYLRKNE 597
            YGSGRRGGEVAQFL+GLAE  A N YPRRFISFCRVG GLS++ELD +V+KLKPY RKNE
Sbjct: 469  YGSGRRGGEVAQFLLGLAECPASNTYPRRFISFCRVGNGLSNEELDTVVSKLKPYFRKNE 528

Query: 596  YPKRTP-SFYEVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEAFAAPYCLRFPRIDR 420
            YPK +P SFY+VTNNSKERPDVWIE+P+KSIILSITSDIRTI SE F+APY LRFPRIDR
Sbjct: 529  YPKNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDR 588

Query: 419  VRYDKPWHECLDVQSFVDLVHSSNGNTQRGMGYGDFQENKPKRIKASSKGDKKIFSVVPS 240
            VRYDKPWHECLDVQSFV+LVHSSNG TQ+G GYGD Q++KP  IK+S KG+KK  SVVPS
Sbjct: 589  VRYDKPWHECLDVQSFVELVHSSNGTTQKGKGYGDVQDSKPTHIKSSRKGEKKSVSVVPS 648

Query: 239  HFIKTDVSGVKEATCMFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIA 60
            H I+TD+S +K  T +F+NMMFY +NVPP+ SL+S HKMVAENGG+FSMNLN+SVTHCIA
Sbjct: 649  HLIQTDISDIKGETLIFSNMMFYVVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIA 708

Query: 59   AERKGIKYQAAKLRRDIIH 3
            AE KGIKYQAAKL  DIIH
Sbjct: 709  AESKGIKYQAAKLHGDIIH 727


>ref|XP_002527709.1| DNA ligase IV, putative [Ricinus communis]
            gi|223532899|gb|EEF34668.1| DNA ligase IV, putative
            [Ricinus communis]
          Length = 850

 Score =  415 bits (1067), Expect = e-114
 Identities = 205/259 (79%), Positives = 221/259 (85%), Gaps = 1/259 (0%)
 Frame = -2

Query: 776  YGSGRRGGEVAQFLVGLAERSAPNIYPRRFISFCRVGTGLSDDELDALVTKLKPYLRKNE 597
            YGSGRRGGEVAQFLVGLAER AP+ YPRRFISFCRVGTGL+DDEL A+V KLKPY RK E
Sbjct: 436  YGSGRRGGEVAQFLVGLAERPAPDTYPRRFISFCRVGTGLTDDELAAVVNKLKPYFRKYE 495

Query: 596  YPKRTP-SFYEVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEAFAAPYCLRFPRIDR 420
            YPK  P +FY+VTNNSKERPDVWIESPEKSIILSITSDIRTI SE FAAPY LRFPRIDR
Sbjct: 496  YPKMAPPNFYQVTNNSKERPDVWIESPEKSIILSITSDIRTISSEVFAAPYSLRFPRIDR 555

Query: 419  VRYDKPWHECLDVQSFVDLVHSSNGNTQRGMGYGDFQENKPKRIKASSKGDKKIFSVVPS 240
            VRYDKPWHECLDVQSFV+LVHSSNG TQ G      Q+NKP  +K+S KG +K  S VPS
Sbjct: 556  VRYDKPWHECLDVQSFVELVHSSNGTTQNGKDNKGLQDNKPTSVKSSKKGGRKNASAVPS 615

Query: 239  HFIKTDVSGVKEATCMFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIA 60
            HFI+TDVSGVKE + +F+ MMFYF+NVPP  SL+S HKMVAENGGSFSMNLN SVTHCIA
Sbjct: 616  HFIETDVSGVKEESFIFSKMMFYFVNVPPTHSLESLHKMVAENGGSFSMNLNKSVTHCIA 675

Query: 59   AERKGIKYQAAKLRRDIIH 3
            AE KGIKYQA KL  DIIH
Sbjct: 676  AESKGIKYQATKLHGDIIH 694