BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024411
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              139   2e-31
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   139   2e-31
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   137   9e-31
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   137   9e-31
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   123   2e-26

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  139 bits (350), Expect = 2e-31
 Identities = 66/119 (55%), Positives = 90/119 (75%)
 Frame = -1

Query: 357 VESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPM 178
           ++SL NEI++S+F + G  E L  F+S+QPLLMENLF EG+SV L+DFS+P    +++  
Sbjct: 637 LQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQK 696

Query: 177 SIQDISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLIDSKSESSINK 1
           +++DISSLL+ LRS +NEL++LQ  NHL   K P  NF+L  S LGNLIDSKS+S+INK
Sbjct: 697 NVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINK 755


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  139 bits (350), Expect = 2e-31
 Identities = 66/119 (55%), Positives = 90/119 (75%)
 Frame = -1

Query: 357 VESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPM 178
           ++SL NEI++S+F + G  E L  F+S+QPLLMENLF EG+SV L+DFS+P    +++  
Sbjct: 577 LQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQK 636

Query: 177 SIQDISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLIDSKSESSINK 1
           +++DISSLL+ LRS +NEL++LQ  NHL   K P  NF+L  S LGNLIDSKS+S+INK
Sbjct: 637 NVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINK 695


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score =  137 bits (345), Expect = 9e-31
 Identities = 69/117 (58%), Positives = 89/117 (76%)
 Frame = -1

Query: 351 SLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSI 172
           SL NEI++S+F   G +E L  F+S+QPLLME++F EG+SV L D+S+P +F + L  +I
Sbjct: 579 SLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNI 638

Query: 171 QDISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLIDSKSESSINK 1
           Q +S LL++LRS  NELVELQ+ NHL SVK P  NF+LKLS LG L DSKSES+INK
Sbjct: 639 QVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINK 695


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score =  137 bits (345), Expect = 9e-31
 Identities = 69/117 (58%), Positives = 89/117 (76%)
 Frame = -1

Query: 351 SLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSI 172
           SL NEI++S+F   G +E L  F+S+QPLLME++F EG+SV L D+S+P +F + L  +I
Sbjct: 609 SLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNI 668

Query: 171 QDISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLIDSKSESSINK 1
           Q +S LL++LRS  NELVELQ+ NHL SVK P  NF+LKLS LG L DSKSES+INK
Sbjct: 669 QVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAINK 725


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  123 bits (308), Expect = 2e-26
 Identities = 63/119 (52%), Positives = 83/119 (69%)
 Frame = -1

Query: 357 VESLFNEIISSVFLDNGSKEALNVFNSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPM 178
           V S+ NEI+ S+F + GS   L  FN++QPLLMENLF EG+SV LKDFS+ ++  + +  
Sbjct: 497 VASMINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQE 556

Query: 177 SIQDISSLLHRLRSRHNELVELQVRNHLTSVKAPAVNFLLKLSGLGNLIDSKSESSINK 1
           S + IS LL  LRS +NELVELQV NH+  VK P + F+L  S LG LIDSKS+ ++ K
Sbjct: 557 SFKVISPLLCNLRSTYNELVELQVENHIQDVKTPVLEFILTSSALGYLIDSKSDGAVAK 615