BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024401
         (763 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    87   3e-15
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    84   3e-14
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    82   1e-13
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    82   1e-13
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    77   4e-12

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 8/206 (3%)
 Frame = -2

Query: 750  SVMFQVQGAVKRAYDRSKKHMNNST-----RDLEVLKAWKLPAKLRRAPHILECYWVAPP 586
            S +  +Q A  R +       N ST      D  +L+ + +  + R+   I+   W  P 
Sbjct: 960  SQLQSIQSAKARIHSLIAMSGNVSTGKCLHSDSAILEEFSVSPRHRKYKDIILVLWKNPS 1019

Query: 585  SIMIKVNVDGCSRGNPGISGWGTLLRDSTGKVIGAYIGGLGIATNFIAESFAIVEGISKA 406
              ++KVN DG   G  G++  G L RDS+G  +GA+   +G+A+ F AE+ A +  +  A
Sbjct: 1020 PPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHA 1077

Query: 405  VELGWKHIWVESDSTAAVKSFQNDQ-VHWQI*AAWDKVKGLTEWIIVTNTWREVNFGADI 229
               GW+++W+ESDST+A+  F N   V W +   W   + L   +I ++   E N     
Sbjct: 1078 AHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGN----R 1133

Query: 228  CSKEAAHLAKGEKK--WWDGRPTFVH 157
            C+   A++  G +   W +  PT +H
Sbjct: 1134 CADNLANMGHGIQGSIWLETLPTELH 1159


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
 Frame = -2

Query: 576 IKVNVDGCSRGNPGISGWGTLLRDSTGKVIGAYIGGLGIATNFIAESFAIVEGISKAVEL 397
           +K+N+DG + G P     G + R+     +G +   +G AT F AE  A +  I K++E 
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 396 GWKHIWVESDSTAAVKSF-QNDQVHWQI*AAWDKVKGLTEWI--IVTNTWREVNFGADIC 226
             + IW+E+DS   VK+F  ++ V WQ+   W+    L + I  + T+  RE N GAD  
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSL 130

Query: 225 SKEAAHLAKGEKKWWDGRPTF 163
           +K    LA    +WW   P F
Sbjct: 131 AKNGKSLALLTSQWWSSSPLF 151


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
 Frame = -2

Query: 723 VKRAYDRSKKHMNNSTRDLEVLKAWKLPAKLRRAPHILECYWVAPPSIMIKVNVDGCSRG 544
           VK ++       N++ +D +V K + +P K++R    L+  W  P   ++K+N DG S G
Sbjct: 175 VKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVG 234

Query: 543 NPGISGWGTLLRDSTGKVIGAYIGGLGIATNFIAESFAIVEGISKAVELGWKHIWVESDS 364
                  G ++RDS    +GA    +G AT   AE  A +  + KA E+   H+ +E+DS
Sbjct: 235 RHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDS 294

Query: 363 TAAVKSFQND-QVHWQI*AAWDKVKGLTEWIIVT--NTWREVNFGADICSKEAAHLAKGE 193
              V +F     V WQ+ A W       + I  +  +  RE N  AD  +K    L+   
Sbjct: 295 LKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYY 354

Query: 192 KKWWDGRPTFVHRI 151
            + W   P F++ +
Sbjct: 355 TQLWTSPPPFIYHL 368


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
 Frame = -2

Query: 723 VKRAYDRSKKHMNNSTRDLEVLKAWKLPAKLRRAPHILECYWVAPPSIMIKVNVDGCSRG 544
           VK ++       N++ +D +V K + +P K++R    L+  W  P   ++K+N DG S G
Sbjct: 12  VKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVG 71

Query: 543 NPGISGWGTLLRDSTGKVIGAYIGGLGIATNFIAESFAIVEGISKAVELGWKHIWVESDS 364
                  G ++RDS    +GA    +G AT   AE  A +  + KA E+   H+ +E+DS
Sbjct: 72  RHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDS 131

Query: 363 TAAVKSFQND-QVHWQI*AAWDKVKGLTEWIIVT--NTWREVNFGADICSKEAAHLAKGE 193
              V +F     V WQ+ A W       + I  +  +  RE N  AD  +K    L+   
Sbjct: 132 LKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYY 191

Query: 192 KKWWDGRPTFVHRI 151
            + W   P F++ +
Sbjct: 192 TQLWTSPPPFIYHL 205


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
 Frame = -2

Query: 684 NSTRDLEVLKAWKLPAKLRRAPHILECYWVAPPSIMIKVNVDGCSRGNPGISGWGTLLRD 505
           +S +D ++ + + +P K  R     E  WV P    +K+N DG   G+P     G + R 
Sbjct: 217 SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRA 276

Query: 504 STGKVIGAYIGGLGIATNFIAESFAIVEGISKAVELGWKHIWVESDSTAAVKSFQ-NDQV 328
           S     GA+   +G AT   AE  A +  I KA EL   +IW+E+DS   +++F  N  V
Sbjct: 277 SQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGV 336

Query: 327 HWQI*AAWDKVKGLTEWI--IVTNTWREVNFGADICSKEAAHLA 202
            W++   W         I  + T+  RE N  AD  +K    LA
Sbjct: 337 PWKMHIRWHNCLLFCRSIRSLCTHVNREGNLVADALAKNGQGLA 380