BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024400
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]              168   4e-40
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     168   4e-40
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2...   164   7e-39
dbj|BAF03051.1| DNA ligase IV [Populus nigra]                         164   9e-39
ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4...   158   4e-37

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  168 bits (426), Expect = 4e-40
 Identities = 80/113 (70%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = +1

Query: 1    IAAERKGIKYQAAKLRRDIIHYSWVLDCCSQKRLLHLQPKYFLFLADSSKTKLQSELDEF 180
            +AA+ KGIKYQAAKLR DIIH SWV DCCSQK+LL LQPKYFLFL++ SK KLQ E+D+F
Sbjct: 699  VAAQSKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKF 758

Query: 181  SDSYFWDLDLMDIKQLLKNIDRLEDRKTIDYYTRKYCPKEK-CQFQDCQIYFH 336
            SDSY+ DLD+ DIKQLL N+DR ++ KTIDYY  KYCPKEK  +F DC I FH
Sbjct: 759  SDSYYQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFH 811


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  168 bits (426), Expect = 4e-40
 Identities = 80/113 (70%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = +1

Query: 1    IAAERKGIKYQAAKLRRDIIHYSWVLDCCSQKRLLHLQPKYFLFLADSSKTKLQSELDEF 180
            +AA+ KGIKYQAAKLR DIIH SWV DCCSQK+LL LQPKYFLFL++ SK KLQ E+D+F
Sbjct: 698  VAAQSKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKF 757

Query: 181  SDSYFWDLDLMDIKQLLKNIDRLEDRKTIDYYTRKYCPKEK-CQFQDCQIYFH 336
            SDSY+ DLD+ DIKQLL N+DR ++ KTIDYY  KYCPKEK  +F DC I FH
Sbjct: 758  SDSYYQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFH 810


>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
            predicted protein [Populus trichocarpa]
          Length = 1242

 Score =  164 bits (415), Expect = 7e-39
 Identities = 80/114 (70%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
 Frame = +1

Query: 1    IAAERKGIKYQAAKLRRDIIHYSWVLDCCSQKRLLHLQPKYFLFLADSSKTKLQSELDEF 180
            IAAE KGIKYQAAKL  DIIHYSWVLDCC QK+LL LQPK FLFL+D SK KL  E+DEF
Sbjct: 707  IAAESKGIKYQAAKLHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEF 766

Query: 181  SDSYFWDLDLMDIKQLLKNIDRLEDRKTIDYYTRKYCPKEKCQ-FQDCQIYFHL 339
            SDSY+WDLDL DIKQLL NI+  ED K ID   +KYCP+EK   F  C +YFH+
Sbjct: 767  SDSYYWDLDLSDIKQLLSNINASEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHI 820


>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
          Length = 1319

 Score =  164 bits (414), Expect = 9e-39
 Identities = 80/114 (70%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
 Frame = +1

Query: 1    IAAERKGIKYQAAKLRRDIIHYSWVLDCCSQKRLLHLQPKYFLFLADSSKTKLQSELDEF 180
            IAAE KGIKYQAAKL  DIIHYSWVLDCC QK+LL LQPK FLFL+D SK KL  E+DEF
Sbjct: 707  IAAESKGIKYQAAKLHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEF 766

Query: 181  SDSYFWDLDLMDIKQLLKNIDRLEDRKTIDYYTRKYCPKEKCQ-FQDCQIYFHL 339
            SDSY+WDLDL DIKQLL NI+  ED K ID   +KYCP+EK   F  C +YFH+
Sbjct: 767  SDSYYWDLDLSDIKQLLSNINASEDGKAIDDLKQKYCPEEKWSLFHGCCVYFHI 820


>ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4-like, partial [Cucumis
           sativus]
          Length = 918

 Score =  158 bits (400), Expect = 4e-37
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 1/112 (0%)
 Frame = +1

Query: 1   IAAERKGIKYQAAKLRRDIIHYSWVLDCCSQKRLLHLQPKYFLFLADSSKTKLQSELDEF 180
           +AA+ KGIKY+AAK   D+IHYSWVL+CCSQK+LL L+PK+FLFL+ +SK KL+ E+DEF
Sbjct: 401 VAADSKGIKYEAAKRHGDVIHYSWVLECCSQKKLLPLKPKHFLFLSGNSKXKLEKEIDEF 460

Query: 181 SDSYFWDLDLMDIKQLLKNIDRLEDRKTIDYYTRKYCPKEK-CQFQDCQIYF 333
           +DSYFWDL+L ++KQLL N+   ED K IDYY  KYCPK+  C F  CQIYF
Sbjct: 461 ADSYFWDLELSELKQLLSNLSISEDVKAIDYYRGKYCPKQDWCMFVGCQIYF 512