BLASTX nr result

ID: Coptis23_contig00024358 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024358
         (692 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30593.3| unnamed protein product [Vitis vinifera]              164   2e-38
ref|XP_002305124.1| predicted protein [Populus trichocarpa] gi|2...   159   5e-37
ref|XP_002273997.2| PREDICTED: LOW QUALITY PROTEIN: glyoxysomal ...   156   3e-36
ref|XP_002329829.1| predicted protein [Populus trichocarpa] gi|2...   147   2e-33
ref|XP_003541729.1| PREDICTED: glyoxysomal processing protease, ...   145   6e-33

>emb|CBI30593.3| unnamed protein product [Vitis vinifera]
          Length = 682

 Score =  164 bits (414), Expect = 2e-38
 Identities = 101/228 (44%), Positives = 135/228 (59%), Gaps = 4/228 (1%)
 Frame = -2

Query: 691 LPQVVELGRKFAVMVRSHGPDPKGLKMQEHAFHRRSRSGKTAISASGMLLPE-FCGRPLI 515
           LP++V+  R FAVMVR  GPDPKGLKM++HAFH    SGKT +SASGMLLP+        
Sbjct: 3   LPEIVDFARNFAVMVRVQGPDPKGLKMRKHAFH-HYHSGKTTLSASGMLLPDTLSDISAA 61

Query: 514 GTHIQDGHD-XXXXXXXXXXXVEPFVLPQYRDKSLKLVVPELIPGAQIDVMVESNLNER- 341
             HI   +D            +EPF+  Q+R+   +   PELI G QIDVMVE N +E  
Sbjct: 62  CKHIHSNNDRNSMLVVSVASILEPFLSLQHRENISQGSHPELIHGVQIDVMVEENNSEEI 121

Query: 340 EEGPSSWIPSKLLALVDVPASSFALQSVIEGTRGYPEVSSWEVGWSLSSLNNSPQALMDG 161
           ++    W+P +LLALVDVPA S A+QS+IE + G  E   W+VGWSL+S       L+D 
Sbjct: 122 DKKAPHWLPVQLLALVDVPAFSLAVQSIIEASSGSRE-QGWDVGWSLASYTGDSHTLVDA 180

Query: 160 HQTEVGHDIRYPLEKPSHSGKSKSRNPSI-AMSTIRVAFLGVPSLTTE 20
            QT+V  + +  +E   H     S +PS+   ST R+A LGV S+ ++
Sbjct: 181 IQTQVDCNAKSSIEGQRHFMVGDSSHPSLMGKSTARIALLGVSSINSK 228


>ref|XP_002305124.1| predicted protein [Populus trichocarpa] gi|222848088|gb|EEE85635.1|
           predicted protein [Populus trichocarpa]
          Length = 752

 Score =  159 bits (402), Expect = 5e-37
 Identities = 99/227 (43%), Positives = 135/227 (59%), Gaps = 9/227 (3%)
 Frame = -2

Query: 691 LPQVVELGRKFAVMVRSHGPDPKGLKMQEHAFHRRSRSGKTAISASGMLLPEFCGRPLIG 512
           LP++V+  R FAVMVR  GPDPKGLKM++HAFH+ + SGKT +SASG+LLP+      + 
Sbjct: 3   LPEIVDFARNFAVMVRIQGPDPKGLKMRKHAFHQYN-SGKTTLSASGLLLPDTLYDADLA 61

Query: 511 THIQDG-HDXXXXXXXXXXXVEPFVLPQYRDKSLKLVVPELIPGAQIDVMVESNLNER-- 341
             I +G              +EPF+  ++R+ S+    PELIPGAQIDVM E   + R  
Sbjct: 62  NRILEGKSQGLGLVVTVASVIEPFLSSKHRE-SISQSRPELIPGAQIDVMAEGKSDLRNG 120

Query: 340 -----EEGPSSWIPSKLLALVDVPASSFALQSVIEGTRGYPEVSSWEVGWSLSSLNNSPQ 176
                ++G S W+ ++++ LVDVP SS ALQS++E + G      WEVGWSL+S  N  Q
Sbjct: 121 ADGGLDKGTSHWLRAQVIRLVDVPLSSLALQSLVEASSGSMN-HGWEVGWSLASPENGSQ 179

Query: 175 ALMDGHQTEVGHDIRYPLEKPSHSGKSKSRNPSI-AMSTIRVAFLGV 38
           + MD  QT+  H     + +     + +S NPSI   ST RVA LGV
Sbjct: 180 SFMDVVQTQTEHG-NASIAESQRRAREESSNPSIMGKSTTRVAILGV 225


>ref|XP_002273997.2| PREDICTED: LOW QUALITY PROTEIN: glyoxysomal processing protease,
           glyoxysomal-like [Vitis vinifera]
          Length = 753

 Score =  156 bits (395), Expect = 3e-36
 Identities = 101/228 (44%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
 Frame = -2

Query: 691 LPQVVELGRKFAVMVRSHGPDPKGLKMQEHAFHRRSRSGKTAISASGMLLPE-FCGRPLI 515
           LP++V+  R FAVMVR  GPDPKGLKM++HAFH    SGKT +SASGMLLP+        
Sbjct: 3   LPEIVDFARNFAVMVRVQGPDPKGLKMRKHAFH-HYHSGKTTLSASGMLLPDTLSDISAA 61

Query: 514 GTHIQDGHD-XXXXXXXXXXXVEPFVLPQYRDKSLKLVVPELIPGAQIDVMVESNLNER- 341
             HI   +D            +EPF+  Q+R+   +   PELI G QIDVMVE N +E  
Sbjct: 62  CKHIHSNNDRNSMLVVSVASILEPFLSLQHRENISQGSHPELIHGVQIDVMVEENNSEEI 121

Query: 340 EEGPSSWIPSKLLALVDVPASSFALQSVIEGTRGYPEVSSWEVGWSLSSLNNSPQALMDG 161
           ++    W+P +LLALVDVPA S A+QS+IE + G  E   W+VGWSL+S       L+D 
Sbjct: 122 DKKAPHWLPVQLLALVDVPAFSLAVQSIIEASSGSRE-QGWDVGWSLASYTGDSHTLVDA 180

Query: 160 HQTEVGHDIRYPLEKPSHSGKSKSRNPSI-AMSTIRVAFLGVPSLTTE 20
            QT+V       L    H     S +PS+   ST R+A LGV S+ ++
Sbjct: 181 IQTQVS------LAXFLHFMVGDSSHPSLMGKSTARIALLGVSSINSK 222


>ref|XP_002329829.1| predicted protein [Populus trichocarpa] gi|222870891|gb|EEF08022.1|
           predicted protein [Populus trichocarpa]
          Length = 716

 Score =  147 bits (371), Expect = 2e-33
 Identities = 96/227 (42%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
 Frame = -2

Query: 691 LPQVVELGRKFAVMVRSHGPDPKGLKMQEHAFHRRSRSGKTAISASGMLLPE-FCGRPLI 515
           LP++V++ R FAV+VR  GPDPKGLKM++HAFH +  SG T +SASG+LLP+      L 
Sbjct: 3   LPEIVDVARNFAVLVRIQGPDPKGLKMRKHAFH-QFNSGNTTLSASGLLLPDTLYDAELA 61

Query: 514 GTHIQDGHDXXXXXXXXXXXVEPFVLPQYRDKSLKLVVPELIPGAQIDVMVESNLNER-- 341
              ++               VEPF+  ++R+  +    PELIPGA +DVMVE  L  R  
Sbjct: 62  NRILEAKSQGLGMVVTVASVVEPFLSSKHRE-GISQGPPELIPGAHVDVMVEGKLGLRKD 120

Query: 340 -----EEGPSSWIPSKLLALVDVPASSFALQSVIEGTRGYPEVSSWEVGWSLSSLNNSPQ 176
                ++G   W+ ++L+ LVDVP SS ALQS++E + G  +   WEVGWSL+S  + PQ
Sbjct: 121 EDGVLDKGAPCWLSAQLIRLVDVPVSSLALQSLVEASSGSMD-HGWEVGWSLASHESGPQ 179

Query: 175 ALMDGHQTEVGHDIRYPLEKPSHSGKSKSRNPSI-AMSTIRVAFLGV 38
             MD   TE G+       + +  G S   NPSI    T RVA LGV
Sbjct: 180 PFMD---TEHGNASTVESHRHARGGSS---NPSIMGRLTTRVAILGV 220


>ref|XP_003541729.1| PREDICTED: glyoxysomal processing protease, glyoxysomal-like
           [Glycine max]
          Length = 749

 Score =  145 bits (367), Expect = 6e-33
 Identities = 93/219 (42%), Positives = 122/219 (55%), Gaps = 1/219 (0%)
 Frame = -2

Query: 691 LPQVVELGRKFAVMVRSHGPDPKGLKMQEHAFHRRSRSGKTAISASGMLLPEFCGRPLIG 512
           L   V   R FAVMVR  GPDPKGLKM+ HAFH+  RSG+T +SASG+L+P+      + 
Sbjct: 15  LSDAVNFARNFAVMVRVRGPDPKGLKMRNHAFHQY-RSGETTLSASGVLVPDTLCDSQVA 73

Query: 511 THIQ-DGHDXXXXXXXXXXXVEPFVLPQYRDKSLKLVVPELIPGAQIDVMVESNLNEREE 335
           T +  D  +           VEPF+ PQ RD ++    P+LI G QIDVM E    +   
Sbjct: 74  TRLNGDNCEDRVLVVTVASVVEPFLSPQQRD-NIPQGRPDLIAGVQIDVMTEETNEKSNR 132

Query: 334 GPSSWIPSKLLALVDVPASSFALQSVIEGTRGYPEVSSWEVGWSLSSLNNSPQALMDGHQ 155
           G   W+ ++LL+LVD+PASS  LQS+IE + G PE   WEVGWSL+S NN  Q   D  Q
Sbjct: 133 GTPCWLLAQLLSLVDIPASSNCLQSLIEASLGLPE-HEWEVGWSLASYNNDSQPSKDFFQ 191

Query: 154 TEVGHDIRYPLEKPSHSGKSKSRNPSIAMSTIRVAFLGV 38
           T       +P E+ +  G   +    +  S  R+A L V
Sbjct: 192 T-------HPRERLAAGGSGSA--SLVYKSLTRMAILSV 221


Top