BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024293
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    66   4e-09
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    63   3e-08
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    62   6e-08
gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japo...    62   6e-08
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...    62   6e-08

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
 Frame = -1

Query: 397 LWTEMRGIS--CNSPWLILGDFKCVLRVEENRGGRAPVRVAVEKFWKSINDCNSLKCNSR 224
           LW  +  I+     PW+++GDF       E RGG      A   F   +N+CN L   + 
Sbjct: 117 LWNYLVNINDTITGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTT 175

Query: 223 GIHLTWSNNLDGLRRIYSKLERGIINYEWRLKYRGWKYKA*CRAGSDRAPL 71
           G   TW  N +G+R +  KL+RG+ N +WRL +     +  CR  SD  PL
Sbjct: 176 GGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPL 226


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
 Frame = -1

Query: 460 KSLLWVITFVHAKCLMRDERRLWTEMRGISCN--SPWLILGDFKCVLRVEENRGGRAPVR 287
           K+  + ++ ++   +  +   LW +++ +S +   PW++ GDF  +L + E +GGR    
Sbjct: 457 KNFNFYLSCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSI 516

Query: 286 VAVEKFWKSINDCNSLKCNSRGIHLTWSNNLDGLRRIYSKLERGIINYEWRLKYRGWKYK 107
            +++ F   IN CN     S+G   +W         I S L+R  IN +W+  +  ++ +
Sbjct: 517 GSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQN-ETIESCLDRVFINSDWQASFPAFETE 575

Query: 106 A*CRAGSDRAPL*GDELQE 50
               AGSD AP+  D  +E
Sbjct: 576 FLPIAGSDHAPVIIDIAEE 594


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
 Frame = -1

Query: 406 ERRLWTEMRGISCN--SPWLILGDFKCVLRVEENRGGRAPVRVAVEKFWKSINDCNSLKC 233
           + R WT MRG+  N  +PWL+ GDF  +L   E +GGR   + A+++F  ++ DC     
Sbjct: 360 KHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDL 419

Query: 232 NSRGIHLTWSNNLDGLR-RIYSKLERGIINYEWRLKY 125
              G   TW N+       I  +L+R + N EWR  +
Sbjct: 420 GFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMF 456


>gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group]
          Length = 915

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = -1

Query: 400 RLWTEMRGISCN--SPWLILGDFKCVLRVEENRGGRAPVRVAVEKFWKSINDCNSLKCNS 227
           + W  +R ++ N   PWL+ GDF  +L   E +GGR   +  ++KF  ++ DC  +    
Sbjct: 348 KTWDTLRSLAMNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGF 407

Query: 226 RGIHLTWSNNLDGLR-RIYSKLERGIINYEWRLKYRGWK 113
            G   TW NN       I   L+R + N EWR+K+  ++
Sbjct: 408 EGDMFTWRNNSHTEEGYIREHLDRAVANQEWRVKFPSFR 446


>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
           gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
           Japonica Group]
          Length = 1453

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = -1

Query: 400 RLWTEMRGISCN--SPWLILGDFKCVLRVEENRGGRAPVRVAVEKFWKSINDCNSLKCNS 227
           + W  +R ++ N   PWL+ GDF  +L   E +GGR   +  ++KF  ++ DC  +    
Sbjct: 385 KTWDTLRSLAMNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGF 444

Query: 226 RGIHLTWSNNLDGLR-RIYSKLERGIINYEWRLKYRGWK 113
            G   TW NN       I   L+R + N EWR+K+  ++
Sbjct: 445 EGDMFTWRNNSHTEEGYIREHLDRAVANQEWRVKFPSFR 483