BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024276
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ...   129   3e-28
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,...   124   8e-27
ref|NP_190245.1| pentatricopeptide repeat-containing protein [Ar...   123   2e-26
ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26

>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
           [Vitis vinifera]
          Length = 763

 Score =  137 bits (344), Expect = 1e-30
 Identities = 67/99 (67%), Positives = 83/99 (83%)
 Frame = -1

Query: 298 LREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIYNSLLGAM 119
           L++  ELPL VYS+MIRGFG DKR+++A+AL EWLK KK+T G + GPNLF+YNSLLGA+
Sbjct: 197 LKDKVELPLQVYSTMIRGFGTDKRLDAAMALVEWLKRKKETNGSK-GPNLFVYNSLLGAV 255

Query: 118 KQCKQFGGVEKVMEDMAEEGVGSNMVTYNTLMAIYLEQG 2
           KQ ++F  VEKVM DMA EG+  N+VTYNTLM+IYLEQG
Sbjct: 256 KQSEKFALVEKVMNDMAREGILPNVVTYNTLMSIYLEQG 294


>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319497|gb|EFH49919.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 674

 Score =  129 bits (323), Expect = 3e-28
 Identities = 62/99 (62%), Positives = 78/99 (78%)
 Frame = -1

Query: 298 LREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIYNSLLGAM 119
           ++EM ELPL VY +MIRGFG DKR++ A+A+ +WL+ KK  +GG IGPNLFIYNSLLGAM
Sbjct: 145 IKEMGELPLQVYCAMIRGFGKDKRLKPAIAVVDWLRRKKSESGGVIGPNLFIYNSLLGAM 204

Query: 118 KQCKQFGGVEKVMEDMAEEGVGSNMVTYNTLMAIYLEQG 2
           KQ    G  EK++ DM EEG+  N+VTYNTLM IY+E+G
Sbjct: 205 KQ-SSVGEAEKILSDMEEEGIVPNIVTYNTLMVIYMEKG 242


>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 671

 Score =  124 bits (311), Expect = 8e-27
 Identities = 61/99 (61%), Positives = 76/99 (76%)
 Frame = -1

Query: 298 LREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIYNSLLGAM 119
           L++  ELPL VYSSMI+ FG D +MESALAL EWLK ++K  G  IGPNLFIYNSLL A+
Sbjct: 105 LKDKGELPLQVYSSMIKAFGWDNKMESALALVEWLK-RRKEIGSSIGPNLFIYNSLLSAV 163

Query: 118 KQCKQFGGVEKVMEDMAEEGVGSNMVTYNTLMAIYLEQG 2
           K+ K F   EK++ DM +EG+  N+VTYNTLM IY+E+G
Sbjct: 164 KKSKLFEEAEKILNDMTQEGIAPNVVTYNTLMGIYVEKG 202


>ref|NP_190245.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206903|sp|Q9SNB7.1|PP264_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g46610 gi|6523064|emb|CAB62331.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332644660|gb|AEE78181.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  123 bits (308), Expect = 2e-26
 Identities = 59/99 (59%), Positives = 78/99 (78%)
 Frame = -1

Query: 298 LREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIYNSLLGAM 119
           L++  ELPL V+ +MI+GFG DKR++ A+A+ +WLK KK  +GG IGPNLFIYNSLLGAM
Sbjct: 138 LKDKGELPLQVFCAMIKGFGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAM 197

Query: 118 KQCKQFGGVEKVMEDMAEEGVGSNMVTYNTLMAIYLEQG 2
              + FG  EK+++DM EEG+  N+VTYNTLM IY+E+G
Sbjct: 198 ---RGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEG 233


>ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46610-like [Glycine max]
          Length = 808

 Score =  122 bits (306), Expect = 3e-26
 Identities = 56/99 (56%), Positives = 76/99 (76%)
 Frame = -1

Query: 298 LREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIYNSLLGAM 119
           L++  +LPL V+S++I GFG +KRM+SAL LF W+K +K  T G  GPNLFIYN LLG +
Sbjct: 240 LKDKGDLPLQVFSTIISGFGKEKRMDSALILFNWMKKRKIETNGSFGPNLFIYNGLLGVV 299

Query: 118 KQCKQFGGVEKVMEDMAEEGVGSNMVTYNTLMAIYLEQG 2
           KQ  QF  +E ++ +MAE+G+  N+VTYNTLMAIY+E+G
Sbjct: 300 KQSGQFAEMEVILNEMAEDGIAYNVVTYNTLMAIYIEKG 338