BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024228
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
ref|XP_002524769.1| pentatricopeptide repeat-containing protein,...    85   7e-15
ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|NP_850482.3| pentatricopeptide repeat-containing protein-lik...    72   5e-11
ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
           [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
           protein product [Vitis vinifera]
          Length = 494

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/90 (56%), Positives = 63/90 (70%)
 Frame = -2

Query: 272 AQLCDELVSNQFHSKKVFGILEDKAVPLIRIYSNGPGFVSLLQKLKPWPLLALEVFNWRR 93
           +QL DELV +   S  V  +LE+K   L R YSNG  FV LL++L  WP LAL+VFNWRR
Sbjct: 67  SQLRDELVPSGDDSDMVVRVLEEKGESLFRSYSNGSAFVELLKQLSSWPYLALQVFNWRR 126

Query: 92  KKCEAGLGMVSEEYAMGITIAGRTKNVDLA 3
            + +  + M SEEYA GI++AGRTKNVDLA
Sbjct: 127 NQTDYSIPMTSEEYAKGISVAGRTKNVDLA 156


>ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535953|gb|EEF37612.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 509

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 47/90 (52%), Positives = 58/90 (64%)
 Frame = -2

Query: 272 AQLCDELVSNQFHSKKVFGILEDKAVPLIRIYSNGPGFVSLLQKLKPWPLLALEVFNWRR 93
           + L DELV +   S K F +LE++   L R+ S+    V LL++L   P LA+EVFNWRR
Sbjct: 82  SHLRDELVQHAEDSDKFFRVLEEQGDSLFRMRSDRSALVELLRQLVSLPHLAVEVFNWRR 141

Query: 92  KKCEAGLGMVSEEYAMGITIAGRTKNVDLA 3
           K+ E    M  EEYA GITIAGR KNVDLA
Sbjct: 142 KQTEWSTPMTHEEYAKGITIAGRAKNVDLA 171


>ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g30780-like [Cucumis sativus]
           gi|449494249|ref|XP_004159492.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g30780-like [Cucumis sativus]
          Length = 514

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/89 (43%), Positives = 57/89 (64%)
 Frame = -2

Query: 269 QLCDELVSNQFHSKKVFGILEDKAVPLIRIYSNGPGFVSLLQKLKPWPLLALEVFNWRRK 90
           ++  EL+ N   S K+  ILED    L+  +++G  FV LL++L   P LALEVFNWRR+
Sbjct: 87  EVSHELILNSEDSNKIVKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEVFNWRRR 146

Query: 89  KCEAGLGMVSEEYAMGITIAGRTKNVDLA 3
           +      +  EEYA GI +AG++K++DLA
Sbjct: 147 Q-GGSFPLTVEEYAKGIAVAGKSKHIDLA 174


>ref|NP_850482.3| pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
           gi|75268024|sp|Q9ZU88.1|PP204_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g48000 gi|4249407|gb|AAD13704.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255828|gb|AEC10922.1|
           pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
          Length = 481

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = -2

Query: 266 LCDELVSNQFHSKKVFGILEDKAVPLIRIYSNGPGFVSLLQKLKPWPLLALEVFNWRRKK 87
           L ++L+  +  S KV  +LE   +        G  FV LL++L+PWP+L+  VF+WRR K
Sbjct: 55  LKNQLLRFRNDSGKVASVLERNKI-------QGAAFVELLRQLRPWPVLSQLVFDWRRNK 107

Query: 86  --CEAGLGMVSEEYAMGITIAGRTKNVDLA 3
             C+ GL M ++EYA GITI+GR KNVDLA
Sbjct: 108 ALCD-GLPMTADEYAKGITISGRLKNVDLA 136


>ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g30780-like [Glycine max]
          Length = 442

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = -2

Query: 266 LCDELVSNQFHSKKVFGILEDKAVPLIRIYSNGPGFVSLLQKLKPWPLLALEVFNWRRKK 87
           L +EL+ +   S +V  IL+D    L R + NG   + L+ +L   P LAL+VF+WRRK+
Sbjct: 18  LKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQVFSWRRKR 77

Query: 86  CEAGLGMVSEEYAMGITIAGRTKNVDLA 3
             A   M + EY+ GI  AGR+ NVDLA
Sbjct: 78  SNAENPMDAYEYSKGIKAAGRSGNVDLA 105