BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024200
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31329.3| unnamed protein product [Vitis vinifera]              144   1e-32
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   143   2e-32
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   143   2e-32
ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|2...   136   2e-30

>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  144 bits (362), Expect = 1e-32
 Identities = 69/112 (61%), Positives = 86/112 (76%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           LEL+S MR  G +LDSV ++IGLGACS IG   +G+E+H +A+  CF   D VKNALITM
Sbjct: 277 LELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITM 336

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           YSRC DL+ AYLLF+  E KSL+TWNSII+GC ++D  +EASF+ REMLL G
Sbjct: 337 YSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFG 388


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  144 bits (362), Expect = 1e-32
 Identities = 69/112 (61%), Positives = 86/112 (76%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           LEL+S MR  G +LDSV ++IGLGACS IG   +G+E+H +A+  CF   D VKNALITM
Sbjct: 322 LELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITM 381

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           YSRC DL+ AYLLF+  E KSL+TWNSII+GC ++D  +EASF+ REMLL G
Sbjct: 382 YSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFG 433


>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  143 bits (360), Expect = 2e-32
 Identities = 67/112 (59%), Positives = 89/112 (79%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           LEL+SHMR  G+++DSV  +IGLGACS IG I +GRE+HG A+   +DG D VKNALITM
Sbjct: 315 LELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITM 374

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           YSRC  LR AY LF+S+  K+++TWNS+++G  ++D  +EASF+FREMLL+G
Sbjct: 375 YSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSG 426



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/112 (29%), Positives = 55/112 (49%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           L     M ++G+  D  T    L AC E   I  G++LH      C      V N+L++M
Sbjct: 179 LSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSM 238

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           Y++  +L  A  LF +   +  V+WN++I+G     ++ EA  +F +M + G
Sbjct: 239 YAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEG 290


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  143 bits (360), Expect = 2e-32
 Identities = 67/112 (59%), Positives = 87/112 (77%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           LEL+S MR  G +LDSV ++IGLGACS IG   +G+E+H +A+  CF   D VKN+LITM
Sbjct: 396 LELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITM 455

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           YSRC DL+ AYLLF+  E KSL++WNSII+GC ++D  +EASF+ REMLL+G
Sbjct: 456 YSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSG 507


>ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|222862390|gb|EEE99896.1|
           predicted protein [Populus trichocarpa]
          Length = 683

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/112 (58%), Positives = 85/112 (75%)
 Frame = +1

Query: 1   LELISHMRYRGVNLDSVTIVIGLGACSEIGFITMGRELHGYAVHRCFDGFDIVKNALITM 180
           LEL+S MR   ++LD V ++IGLGACS IG I +G  +H  A+  CFDGFD V+NALITM
Sbjct: 264 LELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITM 323

Query: 181 YSRCNDLRLAYLLFRSSENKSLVTWNSIIAGCIYLDLYDEASFIFREMLLTG 336
           YSRC DLR A +LF+S + KSL TWNS+++G  ++D  +EASF+FREML +G
Sbjct: 324 YSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSG 375