BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024183
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002864963.1| pentatricopeptide repeat-containing protein ...   159   3e-37
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...   157   7e-37
ref|NP_201360.1| pentatricopeptide repeat-containing protein [Ar...   157   1e-36
ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   151   5e-35
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              151   5e-35

>ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297310798|gb|EFH41222.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 720

 Score =  159 bits (401), Expect = 3e-37
 Identities = 74/105 (70%), Positives = 88/105 (83%)
 Frame = +1

Query: 1   LGRAGRLEEAEWLIAQVENPDVVLWRTLLSACKIHGKVEMAERIMNRVVELEPGDEGAHI 180
           LGRAGRLEEAE LI +V NPD+VLWRTLLSACK+H KVEMAERI  +++E+ PGDEG  I
Sbjct: 496 LGRAGRLEEAEMLITEVTNPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLI 555

Query: 181 LLTNIYASTGHWNEVTKMKTMIKEMKLKKAPAMSWIEVDKEVETF 315
           LL+N+YASTG W  V +MK+ +KEMKLKK PAMSW+E+DKE  TF
Sbjct: 556 LLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTF 600


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  157 bits (398), Expect = 7e-37
 Identities = 70/105 (66%), Positives = 92/105 (87%)
 Frame = +1

Query: 1   LGRAGRLEEAEWLIAQVENPDVVLWRTLLSACKIHGKVEMAERIMNRVVELEPGDEGAHI 180
           LGR+ RLEEA  LI +V NPDVVLWRTLL++CKIHG+VEMAE++M++++EL PGD G HI
Sbjct: 451 LGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHI 510

Query: 181 LLTNIYASTGHWNEVTKMKTMIKEMKLKKAPAMSWIEVDKEVETF 315
           LLTN+YAS G WN+V +MK+ I+++KLKK+PAMSW++VD+EV TF
Sbjct: 511 LLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTF 555


>ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65570 gi|8978285|dbj|BAA98176.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332010689|gb|AED98072.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  157 bits (396), Expect = 1e-36
 Identities = 72/105 (68%), Positives = 89/105 (84%)
 Frame = +1

Query: 1   LGRAGRLEEAEWLIAQVENPDVVLWRTLLSACKIHGKVEMAERIMNRVVELEPGDEGAHI 180
           LGRAGRLEEAE L  +V NPD+VLWRTLLSACK+H KVEMAERI  +++E+EPGDEG  I
Sbjct: 514 LGRAGRLEEAEMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLI 573

Query: 181 LLTNIYASTGHWNEVTKMKTMIKEMKLKKAPAMSWIEVDKEVETF 315
           L++N+YASTG WN V +MK+ +K+MKLKK PAMSW+E++KE  TF
Sbjct: 574 LMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTF 618


>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  151 bits (382), Expect = 5e-35
 Identities = 68/105 (64%), Positives = 91/105 (86%)
 Frame = +1

Query: 1   LGRAGRLEEAEWLIAQVENPDVVLWRTLLSACKIHGKVEMAERIMNRVVELEPGDEGAHI 180
           LGRAGRL+EAE LI QV   DVV+WRTLLSAC+IHG VEMA+R+MNRV++L P D G H+
Sbjct: 526 LGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHV 585

Query: 181 LLTNIYASTGHWNEVTKMKTMIKEMKLKKAPAMSWIEVDKEVETF 315
           LL+N+YASTG+W++V +MK+ ++EM+LKK PAMSW++V++E+ TF
Sbjct: 586 LLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTF 630


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  151 bits (382), Expect = 5e-35
 Identities = 68/105 (64%), Positives = 91/105 (86%)
 Frame = +1

Query: 1   LGRAGRLEEAEWLIAQVENPDVVLWRTLLSACKIHGKVEMAERIMNRVVELEPGDEGAHI 180
           LGRAGRL+EAE LI QV   DVV+WRTLLSAC+IHG VEMA+R+MNRV++L P D G H+
Sbjct: 495 LGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHV 554

Query: 181 LLTNIYASTGHWNEVTKMKTMIKEMKLKKAPAMSWIEVDKEVETF 315
           LL+N+YASTG+W++V +MK+ ++EM+LKK PAMSW++V++E+ TF
Sbjct: 555 LLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTF 599