BLASTX nr result

ID: Coptis23_contig00024158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024158
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266323.1| PREDICTED: protein WUSCHEL [Vitis vinifera] ...   173   2e-41
emb|CAN80814.1| hypothetical protein VITISV_020465 [Vitis vinifera]   173   2e-41
ref|XP_003538876.1| PREDICTED: protein WUSCHEL-like [Glycine max]     159   3e-37
ref|XP_003517180.1| PREDICTED: protein WUSCHEL-like [Glycine max]     157   1e-36
gb|ABS01330.1| WUSCHEL protein [Streptocarpus rexii]                  154   7e-36

>ref|XP_002266323.1| PREDICTED: protein WUSCHEL [Vitis vinifera]
           gi|297735020|emb|CBI17382.3| unnamed protein product
           [Vitis vinifera]
          Length = 280

 Score =  173 bits (438), Expect = 2e-41
 Identities = 85/100 (85%), Positives = 89/100 (89%)
 Frame = -1

Query: 306 FLCRQSSTRWTPTSDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 127
           FLCRQSSTRWTPT+DQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ
Sbjct: 29  FLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 88

Query: 126 NHKARERQKKRFTVDMAMQRGSGLNGVSWKPAEDSIHTKY 7
           NHKARERQKKRFT DM MQR  G  G  W+P +D IH K+
Sbjct: 89  NHKARERQKKRFTTDMPMQRSLGNAG--WRP-DDPIHNKF 125


>emb|CAN80814.1| hypothetical protein VITISV_020465 [Vitis vinifera]
          Length = 280

 Score =  173 bits (438), Expect = 2e-41
 Identities = 85/100 (85%), Positives = 89/100 (89%)
 Frame = -1

Query: 306 FLCRQSSTRWTPTSDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 127
           FLCRQSSTRWTPT+DQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ
Sbjct: 29  FLCRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 88

Query: 126 NHKARERQKKRFTVDMAMQRGSGLNGVSWKPAEDSIHTKY 7
           NHKARERQKKRFT DM MQR  G  G  W+P +D IH K+
Sbjct: 89  NHKARERQKKRFTTDMPMQRSLGNAG--WRP-DDPIHNKF 125


>ref|XP_003538876.1| PREDICTED: protein WUSCHEL-like [Glycine max]
          Length = 324

 Score =  159 bits (402), Expect = 3e-37
 Identities = 83/110 (75%), Positives = 89/110 (80%), Gaps = 9/110 (8%)
 Frame = -1

Query: 306 FLCRQSSTRWTPTSDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 127
           FL RQSSTRWTPT+DQIRILKDLYYNNG+RSPSAEQIQRISARLRQYGKIEGKNVFYWFQ
Sbjct: 62  FLSRQSSTRWTPTNDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 121

Query: 126 NHKARERQKKRFTVD-----MAMQR----GSGLNGVSWKPAEDSIHTKYS 4
           NHKARERQKKRFT D     + MQ+        +  +WKP  D IHTKYS
Sbjct: 122 NHKARERQKKRFTFDHNNNNVPMQQRPPTHPNPSASAWKP--DPIHTKYS 169


>ref|XP_003517180.1| PREDICTED: protein WUSCHEL-like [Glycine max]
          Length = 295

 Score =  157 bits (396), Expect = 1e-36
 Identities = 80/104 (76%), Positives = 85/104 (81%), Gaps = 6/104 (5%)
 Frame = -1

Query: 306 FLCRQSSTRWTPTSDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 127
           FL RQSSTRWTPT+DQIRILK+LYYNNG+RSPSAEQIQRISARLRQYGKIEGKNVFYWFQ
Sbjct: 29  FLSRQSSTRWTPTNDQIRILKELYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 88

Query: 126 NHKARERQKKRFTVD-----MAMQRGSGLNGVSWKP-AEDSIHT 13
           NHKARERQKKRFT D     + MQR       +WKP   D IHT
Sbjct: 89  NHKARERQKKRFTSDHNHNNVPMQRPPTNPSAAWKPDLADPIHT 132


>gb|ABS01330.1| WUSCHEL protein [Streptocarpus rexii]
          Length = 273

 Score =  154 bits (390), Expect = 7e-36
 Identities = 76/87 (87%), Positives = 79/87 (90%), Gaps = 4/87 (4%)
 Frame = -1

Query: 306 FLCRQSSTRWTPTSDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 127
           FLCRQSSTRWTPT+DQIRILKDLYYNNG+RSPSAEQIQRISARLRQYGKIEGKNVFYWFQ
Sbjct: 23  FLCRQSSTRWTPTTDQIRILKDLYYNNGLRSPSAEQIQRISARLRQYGKIEGKNVFYWFQ 82

Query: 126 NHKARERQKKRFTVD----MAMQRGSG 58
           NHKARERQKKRFT D    M MQ  +G
Sbjct: 83  NHKARERQKKRFTCDNIPAMQMQYRNG 109


Top