BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024108
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus ...   125   4e-27
ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|2...   122   3e-26
ref|XP_003518816.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   119   2e-25
ref|XP_003517903.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   117   1e-24
ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc...   117   1e-24

>ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223546141|gb|EEF47643.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 421

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
 Frame = +3

Query: 111 FESLDMISSLPGEVMIDILHRLPIREAVKTSLLSSSWRYRWMSMPNLVFDARSLPAEAQK 290
           +E  D I+ LP  ++  IL RLPIR+AVKTS+LS+ WRYRW ++ +LVFD + +     K
Sbjct: 4   YEVPDFITDLPSSIIESILTRLPIRDAVKTSILSTKWRYRWATLTHLVFDDKCVAMYCDK 63

Query: 291 ---DSDQVKFVTNALLLHNGIISKFEVNNFLMHGCSDVDRWILVLSRENLNHLVLVFNRQ 461
              +S  VKF++ AL LH+G I KF+++   +  C D+D+W+L LSR ++  LVL     
Sbjct: 64  GVLESRLVKFISRALFLHHGPIHKFQLSTSYLQCCPDIDQWLLFLSRSDIKELVLELGEG 123

Query: 462 NPYQVPACLFYCQTLRKLNL 521
             ++VP+CLF C+ L +L L
Sbjct: 124 EWFRVPSCLFNCKKLTRLEL 143


>ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|222865020|gb|EEF02151.1|
           predicted protein [Populus trichocarpa]
          Length = 420

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/139 (43%), Positives = 89/139 (64%), Gaps = 3/139 (2%)
 Frame = +3

Query: 114 ESLDMISSLPGEVMIDILHRLPIREAVKTSLLSSSWRYRWMSMPNLVFDARSLPAEAQK- 290
           E  D+IS LP  ++  IL RLPIR+AV+TS+LSS WRYRW ++ +LVFD + +   + + 
Sbjct: 5   EDPDLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCSDRP 64

Query: 291 --DSDQVKFVTNALLLHNGIISKFEVNNFLMHGCSDVDRWILVLSRENLNHLVLVFNRQN 464
             ++  V F+T AL LH G I KF+++   +  C D+D+WIL LSR ++  LVL      
Sbjct: 65  VVENCMVNFITRALFLHQGPIHKFQLSTSYLQCCPDIDQWILFLSRSDIKELVLELGEGE 124

Query: 465 PYQVPACLFYCQTLRKLNL 521
            ++VP+CLF C+ L  L L
Sbjct: 125 WFRVPSCLFNCKKLTCLEL 143


>ref|XP_003518816.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine
           max]
          Length = 421

 Score =  119 bits (299), Expect = 2e-25
 Identities = 57/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
 Frame = +3

Query: 123 DMISSLPGEVMIDILHRLPIREAVKTSLLSSSWRYRWMSMPNLVFDARSLPAEAQKDSDQ 302
           D+IS LP  ++  IL +LPIR+AV+TS+LSS WRY+W S+  LVFD + +P    +++ +
Sbjct: 8   DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITQLVFDDKCVPFSNDREAVE 67

Query: 303 ---VKFVTNALLLHNGIISKFEVNNFLMHGCSDVDRWILVLSRENLNHLVLVFNRQNPYQ 473
              VKF+T  L LH G I KF++ N  +  C ++D+WIL LSR ++  LV+       ++
Sbjct: 68  KSVVKFITRVLFLHQGPIHKFQITNSKLQSCPEIDQWILFLSRNDIKELVMELGEGEFFR 127

Query: 474 VPACLFYCQTLRKLNL 521
           +P+ LF C  L +L L
Sbjct: 128 IPSNLFNCGKLTRLEL 143


>ref|XP_003517903.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine
           max]
          Length = 421

 Score =  117 bits (292), Expect = 1e-24
 Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
 Frame = +3

Query: 123 DMISSLPGEVMIDILHRLPIREAVKTSLLSSSWRYRWMSMPNLVFDARSLPAEAQKD--- 293
           D+IS LP  ++  IL +LPIR+AV+TS+LSS WRY+W S+  LVFD + +P    ++   
Sbjct: 8   DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITRLVFDDKCVPFSNDREVVE 67

Query: 294 SDQVKFVTNALLLHNGIISKFEVNNFLMHGCSDVDRWILVLSRENLNHLVLVFNRQNPYQ 473
              VKF+T  L L  G I KF++ N  +  C ++D+WIL LSR ++  LV+       ++
Sbjct: 68  KSVVKFITRVLFLRQGPIHKFQITNSKLQSCPEIDQWILFLSRNDIKELVMELGEGEFFR 127

Query: 474 VPACLFYCQTLRKLNL 521
           +P+ LF C  L +L+L
Sbjct: 128 IPSSLFNCGKLTRLDL 143


>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 428

 Score =  117 bits (292), Expect = 1e-24
 Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
 Frame = +3

Query: 123 DMISSLPGEVMIDILHRLPIREAVKTSLLSSSWRYRWMSMPNLVFDARSLPAEAQK---- 290
           D ISSLPG ++  IL  LPI+EAV+TS+LS+ WRY+W ++PNLVFD++ +   ++     
Sbjct: 17  DRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSEDLLVI 76

Query: 291 DSDQVKFVTNALLLHNGIISKFEVNNFLMHGCSDVDRWILVLSRENLNHLVLVFNRQNPY 470
            S   + + + LLLH+G I KF++++  + G +D+DRW L L+R  +   VL   +   Y
Sbjct: 77  KSKLSRIIDHVLLLHSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEIWKGQRY 136

Query: 471 QVPACLFYCQTLRKLNL 521
           ++P+CLF CQ L  L L
Sbjct: 137 KIPSCLFSCQGLHHLEL 153