BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024059
         (1977 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containi...   353   9e-95
emb|CBI28142.3| unnamed protein product [Vitis vinifera]              347   5e-93
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi...   337   5e-90
ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containi...   337   9e-90
ref|XP_002529360.1| pentatricopeptide repeat-containing protein,...   332   2e-88

>ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like
            [Vitis vinifera]
          Length = 662

 Score =  353 bits (906), Expect = 9e-95
 Identities = 168/264 (63%), Positives = 211/264 (79%)
 Frame = -2

Query: 1976 DNNVVIDVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALE 1797
            +N ++ID VV TALI+MYAKCG I+KSL+IF   K+KDTASWT++ICG AMNG+T+KALE
Sbjct: 393  ENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALE 452

Query: 1796 LFSEMEHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLF 1617
            LF+EM   G KPDDITFIGVLSACSHGGLVEEG  +F SM   ++IEPK+EHYGCL+DL 
Sbjct: 453  LFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLL 512

Query: 1616 GRAGLLDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSG 1437
            GRAG LDEAE  I+  PN +++V++PL+ +LL ACR H N  MGERVA++++G+ES +S 
Sbjct: 513  GRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSS 572

Query: 1436 IHSLAANLYAAADRWEDVTKVRRKMKDLGIKKTPGCSSIEVNGVFHEFLVADSSHPKARE 1257
            +H+L AN+YA+ADRWEDVTKVRRKMKDLG+KK PGCSS+EVNG+ HEFLV D+SHP+ RE
Sbjct: 573  VHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMRE 632

Query: 1256 SYAXXXXXXXXXLSSQENVIDGSI 1185
             Y+         L   EN ++G I
Sbjct: 633  IYSMLDSIAKPLLGLDENEMEGEI 656



 Score = 62.0 bits (149), Expect = 6e-07
 Identities = 27/86 (31%), Positives = 50/86 (58%)
 Frame = -2

Query: 1955 VVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFSEMEH 1776
            V+  T+++  Y  CG +D++ ++F R+  +D   WTA+I G+    + + A+ LF EM+ 
Sbjct: 299  VICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQI 358

Query: 1775 CGGKPDDITFIGVLSACSHGGLVEEG 1698
                PD  T + +L+ C+  G +E+G
Sbjct: 359  KRVSPDRFTLVALLTGCAQLGTLEQG 384


>emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  347 bits (891), Expect = 5e-93
 Identities = 166/261 (63%), Positives = 208/261 (79%)
 Frame = -2

Query: 1967 VVIDVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFS 1788
            ++ D VV TALI+MYAKCG I+KSL+IF   K+KDTASWT++ICG AMNG+T+KALELF+
Sbjct: 305  LLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFA 364

Query: 1787 EMEHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLFGRA 1608
            EM   G KPDDITFIGVLSACSHGGLVEEG  +F SM   ++IEPK+EHYGCL+DL GRA
Sbjct: 365  EMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRA 424

Query: 1607 GLLDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSGIHS 1428
            G LDEAE  I+  PN +++V++PL+ +LL ACR H N  MGERVA++++G+ES +S +H+
Sbjct: 425  GQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHT 484

Query: 1427 LAANLYAAADRWEDVTKVRRKMKDLGIKKTPGCSSIEVNGVFHEFLVADSSHPKARESYA 1248
            L AN+YA+ADRWEDVTKVRRKMKDLG+KK PGCSS+EVNG+ HEFLV D+SHP+ RE Y+
Sbjct: 485  LLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYS 544

Query: 1247 XXXXXXXXXLSSQENVIDGSI 1185
                     L   EN ++G I
Sbjct: 545  MLDSIAKPLLGLDENEMEGEI 565


>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like
            [Cucumis sativus]
          Length = 781

 Score =  337 bits (865), Expect = 5e-90
 Identities = 156/240 (65%), Positives = 197/240 (82%)
 Frame = -2

Query: 1976 DNNVVIDVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALE 1797
            +N + +DVVV TALI+MY+KCGC+DKSL+IF   + KDTASWT++ICG AMNG+T++AL 
Sbjct: 504  ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 563

Query: 1796 LFSEMEHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLF 1617
            LFSEME  G KPDDITFIGVLSACSHGGLVEEG  +F+SMK+ H+IEPK+EHYGC++DL 
Sbjct: 564  LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 623

Query: 1616 GRAGLLDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSG 1437
            GRAGLLDEAE  I  IP  + ++++PL+ +LL ACRIH N  MGER+A+++  +ES +S 
Sbjct: 624  GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSS 683

Query: 1436 IHSLAANLYAAADRWEDVTKVRRKMKDLGIKKTPGCSSIEVNGVFHEFLVADSSHPKARE 1257
            IH+L AN+YA+ DRWED  KVRRKMK+LG+KK PGCS IEV+G+ HEFLV D SHP+  E
Sbjct: 684  IHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMME 743



 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 39/159 (24%), Positives = 80/159 (50%)
 Frame = -2

Query: 1958 DVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFSEME 1779
            +V+  T++I  Y  CG + ++ D+F ++  +D   WTA+I G+      + A+ LF EM+
Sbjct: 409  NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 468

Query: 1778 HCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLFGRAGLL 1599
                KPD  T + +L+ C+  G +E+G  +       ++I   +     L++++ + G +
Sbjct: 469  IQRVKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCV 527

Query: 1598 DEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGE 1482
            D++   +++     D      W+S++  C +  NG   E
Sbjct: 528  DKS---LEIFYELEDKDTAS-WTSII--CGLAMNGKTSE 560


>ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
            At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  337 bits (863), Expect = 9e-90
 Identities = 156/240 (65%), Positives = 197/240 (82%)
 Frame = -2

Query: 1976 DNNVVIDVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALE 1797
            +N + +DVVV TALI+MY+KCGC+DKSL+IF   + KDTASWT++ICG AMNG+T++AL 
Sbjct: 458  ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 517

Query: 1796 LFSEMEHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLF 1617
            LFSEME  G KPDDITFIGVLSACSHGGLVEEG  +F+SMK+ H+IEPK+EHYGC++DL 
Sbjct: 518  LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 577

Query: 1616 GRAGLLDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSG 1437
            GRAGLLDEAE  I  IP  + ++++PL+ +LL ACRIH N  MGER+A+++  +ES +S 
Sbjct: 578  GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSS 637

Query: 1436 IHSLAANLYAAADRWEDVTKVRRKMKDLGIKKTPGCSSIEVNGVFHEFLVADSSHPKARE 1257
            IH+L AN+YA+ DRWED  KVRRKMK+LG+KK PGCS IEV+G+ HEFLV D SHP+  E
Sbjct: 638  IHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIE 697



 Score = 62.0 bits (149), Expect = 6e-07
 Identities = 39/159 (24%), Positives = 80/159 (50%)
 Frame = -2

Query: 1958 DVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFSEME 1779
            +V+  T++I  Y  CG + ++ D+F ++  +D   WTA+I G+      + A+ LF EM+
Sbjct: 363  NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 422

Query: 1778 HCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLFGRAGLL 1599
                KPD  T + +L+ C+  G +E+G  +       ++I   +     L++++ + G +
Sbjct: 423  IQKIKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCV 481

Query: 1598 DEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGE 1482
            D++   +++     D      W+S++  C +  NG   E
Sbjct: 482  DKS---LEIFYELEDKDTAS-WTSII--CGLAMNGKTSE 514


>ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223531180|gb|EEF33027.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 683

 Score =  332 bits (852), Expect = 2e-88
 Identities = 162/262 (61%), Positives = 204/262 (77%)
 Frame = -2

Query: 1976 DNNVVIDVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALE 1797
            +N + ID VV TALI+MYAKCG I+K+L+IF   + KDTASWT++ICG AMNG+T+KALE
Sbjct: 398  ENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALE 457

Query: 1796 LFSEMEHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLF 1617
            LFS+M+  G +PDDITFIGVLSACSHGGLVEEG  +F+SM+  ++I+PK+EHYGCLVDL 
Sbjct: 458  LFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLL 517

Query: 1616 GRAGLLDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSG 1437
            GRAGLL+EAE  I  IP+ +  + +PL+ SLL ACRI+ N  MGERVA+Q++  ESS+S 
Sbjct: 518  GRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSS 577

Query: 1436 IHSLAANLYAAADRWEDVTKVRRKMKDLGIKKTPGCSSIEVNGVFHEFLVADSSHPKARE 1257
            +H+L AN+YA ADRWEDVTKVRRKMKDLG+KKTPGCSSIEV+ + HEF     SHP+ RE
Sbjct: 578  VHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMRE 637

Query: 1256 SYAXXXXXXXXXLSSQENVIDG 1191
             Y          L S +N ++G
Sbjct: 638  IYYMLNIMAKPLLGSAKNEMEG 659



 Score = 61.6 bits (148), Expect = 7e-07
 Identities = 30/123 (24%), Positives = 67/123 (54%)
 Frame = -2

Query: 1958 DVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFSEME 1779
            +V+  T ++  YA CG ++++ ++F  +  +D   WTA+I G+    + ++A+ LF EM+
Sbjct: 303  NVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQ 362

Query: 1778 HCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLFGRAGLL 1599
                KPD    + +L+ C+  G +E+G    + +   ++I         L++++ + G +
Sbjct: 363  IRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDE-NRIPIDAVVGTALIEMYAKCGFI 421

Query: 1598 DEA 1590
            ++A
Sbjct: 422  EKA 424



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 12/235 (5%)
 Frame = -2

Query: 1958 DVVVSTALIDMYAKCGCIDKSLDIFRRTKKKDTASWTALICGFAMNGQTNKALELFSEM- 1782
            D  V  +LIDMYA+    D    +F     +D  SW  +I G+    +   A+ +F  M 
Sbjct: 171  DTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQ 230

Query: 1781 EHCGGKPDDITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVDLFGRAGL 1602
            E  G  PD+ T +  LSAC+    +E G      ++   K  P I +   L+D++ + G 
Sbjct: 231  EESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGC 288

Query: 1601 LDEAERPIDMIPNFSDDVLLPLWSSLLGACRIHRNGHMGERVARQILGMESSNSGIHSLA 1422
            L  A    + +P  S +V+   W++++     + N    E       G    +  I +  
Sbjct: 289  LSIARAVFEEMP--SKNVI--CWTTMVSG---YANCGELEEARELFEGSPIRDVVIWTAM 341

Query: 1421 ANLYAAADRWEDVTKVRRKM--------KDLGIKKTPGCS---SIEVNGVFHEFL 1290
             N Y   +R+++   + R+M        K + +    GC+   +IE     HEF+
Sbjct: 342  INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFI 396