BLASTX nr result
ID: Coptis23_contig00024037
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis23_contig00024037 (2043 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi... 362 2e-97 emb|CCH50966.1| T4.5 [Malus x robusta] 362 2e-97 ref|XP_002511313.1| pentatricopeptide repeat-containing protein,... 348 2e-93 ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi... 343 1e-91 ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi... 336 1e-89 >ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Vitis vinifera] Length = 631 Score = 362 bits (930), Expect = 2e-97 Identities = 182/343 (53%), Positives = 239/343 (69%) Frame = +2 Query: 1013 KMTKDSALDANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALC 1192 +M +++A+D VK VV+LV S W+ + S+N +L +L LR +PLKAL Sbjct: 191 RMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALR 250 Query: 1193 FFRWVEEHMGYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTF 1372 FF+WV E GY H+++TYN + RVLG+ +SI EFWS+ +E+KS GH++D DTY K+SR F Sbjct: 251 FFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQF 310 Query: 1373 IRNLMLKDAVELYELMMDGPYKPSVANCGMLLHAISSSGTPDLDVAFRIFNKYEATGQTL 1552 +N ML+DAV+LYE+MMDGPYKPSV +C MLL +IS S PDL + FR+ KYEA G +L Sbjct: 311 QKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSL 370 Query: 1553 IKILYDGIHRCLIAVGRFDEAEKFLDKRRDAGYEPDNITYSRTVFGFAKAGRMEEACKML 1732 K +YDGIHR L +VGRFDEA K ++ R AG EPDNITYS+ V+G KA ++EEACK+L Sbjct: 371 CKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLL 430 Query: 1733 GEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNFDAGADLLEVLVNGLCSK 1912 EMEA G V + KTW I+IQ HC A E+D+AL F KM+EKN DA ADLLEVL+NG S+ Sbjct: 431 DEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQ 490 Query: 1913 ERVDDAYALVIEMVEKVKMKPLLDTYKNLIXXXXXXXXXXEAL 2041 +R+D AY L++EMV + P TYK +I EA+ Sbjct: 491 KRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAI 533 Score = 80.5 bits (197), Expect = 2e-12 Identities = 89/355 (25%), Positives = 146/355 (41%), Gaps = 39/355 (10%) Frame = +2 Query: 1055 VVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALCFFRWVEEHMGYTHN 1234 +V+LVL +DW+D+ + ++ +L L K P + FF WV E G+ + Sbjct: 68 IVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPS 127 Query: 1235 AVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTFIRNLMLKDAVEL-- 1408 + Y+ +LR L ES+ +FW +++K G ID +TY + F + M + V L Sbjct: 128 SAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTH 187 Query: 1409 -YELMMD----------------------------GPYKPSVANCGMLLHAISSSGTPDL 1501 Y M+ G K S ++ +LH + L Sbjct: 188 FYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSD-NFVLHVLRELRGYPL 246 Query: 1502 DVAFRIFNKY-EATGQTLIKILYDGIHRCLIAVGRFDEAEKF---LDKRRDAGYEPDNIT 1669 A R F E G I Y+ I R L GR D +F +++ + G+E D T Sbjct: 247 K-ALRFFQWVGECPGYEHSSITYNVIARVL---GRDDSIGEFWSMVEEMKSKGHEMDIDT 302 Query: 1670 YSRTVFGFAKAGRMEEACKMLGEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKML 1849 Y + F K +E+A K+ M Y + ++++ L+ D AL F ++ Sbjct: 303 YIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVF--RVT 360 Query: 1850 EKNFDAGADLLEVLVNG----LCSKERVDDAYALVIEMVEKVKMKPLLDTYKNLI 2002 EK G L + + +G L S R D+A ++E + +P TY L+ Sbjct: 361 EKYEAVGNSLCKAVYDGIHRSLTSVGRFDEA-GKIMESMRSAGCEPDNITYSQLV 414 >emb|CCH50966.1| T4.5 [Malus x robusta] Length = 1670 Score = 362 bits (929), Expect = 2e-97 Identities = 177/276 (64%), Positives = 217/276 (78%) Frame = +1 Query: 4 RSSDGLFLSQSKYIFDILTKANMINAKPCSTPISTTCKLDNHTGVLLDDPTAYRSIVGGL 183 +S GL L Q+KY D+L K +M+ AKPC+TP+ST+ KLD H+G LL DPT+YRS VG L Sbjct: 1384 KSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLLSDPTSYRSTVGAL 1441 Query: 184 QYLTWTRPEISFAVNMVCQFMHSPRLPHLAAAKRILRYLKGTISHGIWFRKGSLSLNAYC 363 QYLTWTRP+++FAVN VCQ+MHSP+ HL A KRILRYLKGT+ G+WF KGS L A+ Sbjct: 1442 QYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKGSQCLTAWS 1501 Query: 364 DADWAGCPMDRRSITGFCVFFVSNPISWSAKKQHTVARSSTEAEYRALAHTAAEIYWLCI 543 DADWAGCP+DRRS +G+CVF SN ISWSAKKQ TVARSSTEAEYR+LA+TAAEI W+C Sbjct: 1502 DADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARSSTEAEYRSLANTAAEITWVCK 1561 Query: 544 LFKDLHIPLSQCPMLHCDNISAISLASNPVFHARTKHVEIDYHYVRELVLSKAITIQYLS 723 + D+ PL + P+++CDN S I+LA NPVFHARTKHVEIDYHY+RE VL I +Q+++ Sbjct: 1562 ILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVEIDYHYIREKVLLGHIGVQHVA 1621 Query: 724 TKDQIADIFTKGLSVQRFEVLLSKLSVQHTPFSLKG 831 + QIADIFTK L+ RF L SKLSV+ FSL+G Sbjct: 1622 SLLQIADIFTKPLAADRFAALTSKLSVRSPSFSLRG 1657 >ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550428|gb|EEF51915.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 627 Score = 348 bits (894), Expect = 2e-93 Identities = 169/348 (48%), Positives = 239/348 (68%) Frame = +2 Query: 998 KESFIKMTKDSALDANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHP 1177 K F +M +++A+D+ VK VV +V ++W+++ ++N ++ +L LR +P Sbjct: 184 KHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYP 243 Query: 1178 LKALCFFRWVEEHMGYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKK 1357 LKAL FF W + Y N +TYN++ RVLG+ +SI EFWS+ +E+K+ GH++D DTY K Sbjct: 244 LKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIK 303 Query: 1358 LSRTFIRNLMLKDAVELYELMMDGPYKPSVANCGMLLHAISSSGTPDLDVAFRIFNKYEA 1537 +SR F +N ++ DAV+LYE MMDGP+KPSV +C MLL +IS+S PDL++ FR+ NKYEA Sbjct: 304 ISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQDCSMLLRSISASNYPDLNLVFRVVNKYEA 363 Query: 1538 TGQTLIKILYDGIHRCLIAVGRFDEAEKFLDKRRDAGYEPDNITYSRTVFGFAKAGRMEE 1717 TG +L K +YDGIHR L ++G FDEA K + + AGYEPDNITYS+ VFG KA R+EE Sbjct: 364 TGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKARRLEE 423 Query: 1718 ACKMLGEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNFDAGADLLEVLVN 1897 AC++L EMEA G + + KTW I+IQ HC+A E+ +AL KM+EK+ D ADLL VL+N Sbjct: 424 ACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLAVLIN 483 Query: 1898 GLCSKERVDDAYALVIEMVEKVKMKPLLDTYKNLIXXXXXXXXXXEAL 2041 S++R+D AY L ++MV+K +++P TYK LI EAL Sbjct: 484 AFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEAL 531 Score = 73.9 bits (180), Expect = 1e-10 Identities = 86/390 (22%), Positives = 148/390 (37%), Gaps = 75/390 (19%) Frame = +2 Query: 1007 FIKMTKDSALDANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKA 1186 ++ + K + +V+L+ +DW+ + + ++ +L L K P KA Sbjct: 50 YVNIHKKLYSSSKPSSLVELLSVNDWSPELETQLENSSPLLTHETVIYVLKKLDKDPHKA 109 Query: 1187 LCFFRWVEEHMGYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSR 1366 FF WV + G+ ++ Y+ MLR+L KK+S+ FW +++K G D +TY + Sbjct: 110 WDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILG 169 Query: 1367 TFIRNLMLKDAV---ELYELMMDGPYKPSVA-NCGMLLHAISSSGTPDLDV--------- 1507 F + M DAV ++ M++ SV N ++ A S + ++ Sbjct: 170 VFRKERMDSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTD 229 Query: 1508 ----------------AFRIFN------KYEATGQTLIKILYDGIHRCLIAVGRFDEAEK 1621 A + FN +YE I Y+ I R L GR D + Sbjct: 230 NFVIRVLKELRNYPLKALQFFNWAGKCERYECN-----TITYNAIARVL---GRDDSIGE 281 Query: 1622 F---LDKRRDAGYEPDNITYSRTVFGFAKAGRMEEACKM--------------------- 1729 F +++ ++AG+E D TY + F K M +A K+ Sbjct: 282 FWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQDCSMLLR 341 Query: 1730 ----------------LGEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNF 1861 + + EA G L +D I + G D+A M + Sbjct: 342 SISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGY 401 Query: 1862 DAGADLLEVLVNGLCSKERVDDAYALVIEM 1951 + LV GLC R+++A ++ EM Sbjct: 402 EPDNITYSQLVFGLCKARRLEEACEVLDEM 431 >ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cucumis sativus] gi|449524136|ref|XP_004169079.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cucumis sativus] Length = 632 Score = 343 bits (879), Expect = 1e-91 Identities = 166/343 (48%), Positives = 235/343 (68%) Frame = +2 Query: 1013 KMTKDSALDANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALC 1192 +M + +A+D+ V+ VVD+VLGSDW++D S+N ++ +L LR PLKAL Sbjct: 184 RMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPLKALS 243 Query: 1193 FFRWVEEHMGYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTF 1372 FF WV Y HN V+YN++ RVLG+ +SI+ FW + +E+K H+ID DTY K+SR F Sbjct: 244 FFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQF 303 Query: 1373 IRNLMLKDAVELYELMMDGPYKPSVANCGMLLHAISSSGTPDLDVAFRIFNKYEATGQTL 1552 ++ M+ +AV+LYELMMDGPYKPS+ +C +LL I++S PDL + +R+ K+EATG +L Sbjct: 304 QKSKMMGEAVKLYELMMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSL 363 Query: 1553 IKILYDGIHRCLIAVGRFDEAEKFLDKRRDAGYEPDNITYSRTVFGFAKAGRMEEACKML 1732 K +YDGIHR L + G+FD+AE + R+AGYEPDN+TYS+ VFG KA R+EEA K+L Sbjct: 364 SKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVL 423 Query: 1733 GEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNFDAGADLLEVLVNGLCSK 1912 EMEA+G + + KTW I+IQ HC A E+D AL F KM+EKN D ADLL+VL++G ++ Sbjct: 424 DEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLDVLISGFLNQ 483 Query: 1913 ERVDDAYALVIEMVEKVKMKPLLDTYKNLIXXXXXXXXXXEAL 2041 ++++ AY L+IE+ K ++P TYK LI EA+ Sbjct: 484 KKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAI 526 Score = 70.5 bits (171), Expect = 2e-09 Identities = 84/374 (22%), Positives = 140/374 (37%), Gaps = 70/374 (18%) Frame = +2 Query: 1040 ANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALCFFRWVEEHM 1219 +N + ++ LV +DW++ + ++ +L L K P KA FF W Sbjct: 56 SNPQSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKN 115 Query: 1220 GYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTFIRNLMLKDA 1399 G T ++ Y+ +LR+ + ES+ FW + +K G +D +TYK + ++ DA Sbjct: 116 GSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADA 175 Query: 1400 VEL---YELMMDGPYKPSVAN--CGMLLHAISSSGTP----DLDVA------FRIFNKYE 1534 L Y M+ SV ++L + S+ P +L +A R+ + Sbjct: 176 TGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELR 235 Query: 1535 ATGQTLIK---------------ILYDGIHRCLIAVGRFDEAEKF---LDKRRDAGYEPD 1660 + + + Y+ I R L GR D E F +++ + A +E D Sbjct: 236 NSPLKALSFFHWVGCRPDYDHNTVSYNAIARVL---GRDDSIEAFWGVIEEMKHANHEID 292 Query: 1661 NITYSRTVFGFAKAGRMEEACKMLGEM--------------------------------- 1741 TY + F K+ M EA K+ M Sbjct: 293 IDTYIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRV 352 Query: 1742 ----EARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNFDAGADLLEVLVNGLCS 1909 EA GY L +D I + G+ D A N M ++ LV GLC Sbjct: 353 AKKFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCK 412 Query: 1910 KERVDDAYALVIEM 1951 R+++A ++ EM Sbjct: 413 ARRLEEARKVLDEM 426 >ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max] Length = 635 Score = 336 bits (862), Expect = 1e-89 Identities = 167/343 (48%), Positives = 228/343 (66%) Frame = +2 Query: 1013 KMTKDSALDANVKGVVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALC 1192 +M +++A+ + V VV ++ S+W D+ S+N ++ +L LRK PLKA Sbjct: 190 RMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPLKAYK 249 Query: 1193 FFRWVEEHMGYTHNAVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTF 1372 FF WV + GY H+ VTYN++ RVL + ESI+EFWS+ +E+K VGH++D DTY K++R Sbjct: 250 FFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQL 309 Query: 1373 IRNLMLKDAVELYELMMDGPYKPSVANCGMLLHAISSSGTPDLDVAFRIFNKYEATGQTL 1552 RN M++DAV+LYELMMDG KP V +C MLL +IS++ P+LD+ FR+ KYE+TG TL Sbjct: 310 QRNRMMEDAVKLYELMMDGSCKPLVQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTL 369 Query: 1553 IKILYDGIHRCLIAVGRFDEAEKFLDKRRDAGYEPDNITYSRTVFGFAKAGRMEEACKML 1732 K +YDGIHR L + G FDEAE + R+AGYEPDNITYS+ VFG K R EEACK+L Sbjct: 370 SKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVL 429 Query: 1733 GEMEARGYVLEFKTWDIIIQRHCLAGEIDQALNFFTKMLEKNFDAGADLLEVLVNGLCSK 1912 +ME+ + + KTW I+IQ HC A E+D+AL F KM+EK D ADLL+VL +G S+ Sbjct: 430 EDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDVLADGFLSQ 489 Query: 1913 ERVDDAYALVIEMVEKVKMKPLLDTYKNLIXXXXXXXXXXEAL 2041 +R++ AY LV E+ K ++ P TYK LI EAL Sbjct: 490 KRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMKFEEAL 532 Score = 84.3 bits (207), Expect = 1e-13 Identities = 77/315 (24%), Positives = 142/315 (45%), Gaps = 5/315 (1%) Frame = +2 Query: 1055 VVDLVLGSDWNDDXXXXXXXXXXXXSENVLLSILTALRKHPLKALCFFRWVEEHMGYTHN 1234 +V+L+L +DW+ +L ++ L K+P KA CFF WV + + + + Sbjct: 67 IVELLLTNDWSQALELKLENRFPSMPHETVLYVIKRLDKNPEKASCFFNWVCKKVWFRPS 126 Query: 1235 AVTYNSMLRVLGKKESIDEFWSLAKELKSVGHDIDSDTYKKLSRTFIRNLMLKDAVEL-- 1408 Y+ ++R+L K+++ +FW + +K G +D +TY +S F R M D+V L Sbjct: 127 CSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSVALTH 186 Query: 1409 -YELMMDGPYKPSVANCGMLLHAISSSGTPDLDVAFRIFNKYEATGQTLIKILYDGIHRC 1585 Y M++ SV + ++ IS S D V + + + +I++L + + + Sbjct: 187 FYNRMLEENAMQSVVS--NVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKE-LRKT 243 Query: 1586 LIAVGRFDEAEKFLDKRRDAGYEPDNITYSRTVFGFAKAGRMEEACKMLGEMEARGYVLE 1765 + +F F + +GYE D +TY+ +A +EE ++ EM+ G+ L+ Sbjct: 244 PLKAYKF-----FHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELD 298 Query: 1766 FKTWDIIIQRHCLAGEIDQALNFFTKMLEKN--FDAGADLLEVLVNGLCSKERVDDAYAL 1939 T+ I T+ L++N + L E++++G C K V D L Sbjct: 299 IDTYIKI-----------------TRQLQRNRMMEDAVKLYELMMDGSC-KPLVQDCNML 340 Query: 1940 VIEMVEKVKMKPLLD 1984 + + KP LD Sbjct: 341 LKSI--SANDKPNLD 353