BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024030
         (1193 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...    55   2e-11
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...    56   1e-10
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               49   2e-09
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    49   2e-09
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...    58   5e-06

>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score = 54.7 bits (130), Expect(2) = 2e-11
 Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 25/185 (13%)
 Frame = -1

Query: 992 GKGYFTQDECILQKSPVPPN-LPVDT*DL*WN*QYVF*YICIDTRDMVLQI*SFIRLT*M 816
           GKGYF QD  ILQ+ PVPPN L V           V   I I + D+ + I   +     
Sbjct: 117 GKGYFPQDGYILQQLPVPPNCLSVPA---------VSDGISIMSSDLSISILKKVLKQVE 167

Query: 815 ICTVNSCGVSS--------------------C*GNW*DSRDIKMRSGISKEVRDYATKAL 696
           +   +  G  +                      G    SRD+ +R G+ K+  + +TKA 
Sbjct: 168 VIKSSRSGAPNFDAHKDEANSLQSMVDRYLQVRGTTKTSRDVDVRYGVKKDSSESSTKAW 227

Query: 695 FEKVKNIF*QQXXXXXXXXXXXXXXXXXXXFRVYSSGNVVTGD----VNEIVLPLEIAQR 528
            EK++ +F ++                      +SS +V+TGD    VN++ +P EIAQR
Sbjct: 228 LEKMRTLFIRKGSG-------------------FSSRSVITGDAYTKVNQVGIPYEIAQR 268

Query: 527 IIFEE 513
           I FEE
Sbjct: 269 ITFEE 273



 Score = 41.2 bits (95), Expect(2) = 2e-11
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 24/167 (14%)
 Frame = -3

Query: 495 KLFIRHSDGVSMHSIREDLKGHTLL------DKLYIDELRMWMSRSLNGHQVHT----NI 346
           KL + + DG S +S+RE  KGHT L       +  ID   ++++R    H+ H+    ++
Sbjct: 290 KLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDVVFINRPPTTHK-HSLQALSV 348

Query: 345 FKHFSICS*RSTVKINPLICGYLF*PRLYSYILTF--SNLLQEQRRWELFAVEQK----- 187
           + H        TVKINPLICG L        +  F   +L  +    ELF+VE++     
Sbjct: 349 YVHDD-----HTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSH 403

Query: 186 TAQLS*WLLLANDAFAVENFFF-------DTAKWVAMFVSTT*QQPA 67
           +  L+  L L  D+       F         A+ +AMFVS    QPA
Sbjct: 404 SGNLN--LQLTTDSLLSLKMIFKACFLDKSAAQQLAMFVSPDLPQPA 448


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 924

 Score = 55.8 bits (133), Expect(2) = 1e-10
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 30/202 (14%)
 Frame = -1

Query: 1028 EILDNFSEDTRK---GKGYFTQDECILQKSPVPP---NLPVDT*DL*WN*QYVF*YICID 867
            +IL     +TRK   GKGYF QD  ILQ+ PVPP   ++PV           V   I + 
Sbjct: 184  QILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPV-----------VSDGITVM 232

Query: 866  TRDMVLQI*SFIRLT*MICTVNSCGVSS--------------------C*GNW*DSRDIK 747
            + D+ + +   +     +   +  G  +                      G    SRD+ 
Sbjct: 233  SSDLSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVD 292

Query: 746  MRSGISKEVRDYATKALFEKVKNIF*QQXXXXXXXXXXXXXXXXXXXFRVYSSGNVVTGD 567
             R G+ KE  +  TKA  EK++ +F ++                      +SS +V+TGD
Sbjct: 293  TRYGVKKESSESTTKAWLEKMRTLFIRKGSG-------------------FSSRSVITGD 333

Query: 566  ----VNEIVLPLEIAQRIIFEE 513
                VN++ +P EIAQRI FEE
Sbjct: 334  AYTLVNQVGIPYEIAQRITFEE 355



 Score = 37.7 bits (86), Expect(2) = 1e-10
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
 Frame = -3

Query: 495 KLFIRHSDGVSMHSIREDLKGHTLL------DKLYIDELRMWMSRSLNGHQVHT----NI 346
           KL + + DG S +S+RE  KGHT L       +  +D   ++++R    H+ H+    ++
Sbjct: 372 KLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK-HSLQALSV 430

Query: 345 FKHFSICS*RSTVKINPLICGYLF*PRLYSYILTF--SNLLQEQRRWELFAVEQK----- 187
           + H         VKINPLICG L        +  F   +L  +    ELF+VE++     
Sbjct: 431 YVHDD-----HAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSH 485

Query: 186 TAQLS*WLLLANDAFAVENFFF-------DTAKWVAMFVSTT*QQPA 67
           +  L+  L L  D+       F         A+ +AMF+S    QPA
Sbjct: 486 SGNLN--LQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPA 530


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 48.9 bits (115), Expect(2) = 2e-09
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = -1

Query: 761 SRDIKMRSGISKEVRDYATKALFEKVKNIF*QQXXXXXXXXXXXXXXXXXXXFRVYSSGN 582
           SR +  R G SKE  + +TKA  EK++ +F ++                      +SS +
Sbjct: 346 SRSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSG-------------------FSSRS 386

Query: 581 VVTGD----VNEIVLPLEIAQRIIFEE 513
           V+TGD    VNEI LP EIAQRI FEE
Sbjct: 387 VITGDAYKRVNEIGLPFEIAQRITFEE 413



 Score = 40.0 bits (92), Expect(2) = 2e-09
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
 Frame = -3

Query: 495 KLFIRHSDGVSMHSIREDLKGHTLL------DKLYIDELRMWMSRSLNGHQVHT----NI 346
           KL + + DG+S +S+RE  KGHT L       +  +D   ++++R    H+ H+    ++
Sbjct: 430 KLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK-HSLQALSV 488

Query: 345 FKHFSICS*RSTVKINPLICGYLF*PRLYSYILTF--SNLLQEQRRWELFAVEQK----- 187
           + H        TVKINPLICG L        +  F   +L  +    ELF+VE++     
Sbjct: 489 YVHDD-----HTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSH 543

Query: 186 TAQLS*WLLLANDAF-----AVENFFFD--TAKWVAMFVSTT*QQPA 67
           +  L+  L LA D+        E +F +   A+ + MFVS +  +PA
Sbjct: 544 SGNLN--LQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPA 588


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 48.9 bits (115), Expect(2) = 2e-09
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = -1

Query: 761 SRDIKMRSGISKEVRDYATKALFEKVKNIF*QQXXXXXXXXXXXXXXXXXXXFRVYSSGN 582
           SR +  R G SKE  + +TKA  EK++ +F ++                      +SS +
Sbjct: 286 SRSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSG-------------------FSSRS 326

Query: 581 VVTGD----VNEIVLPLEIAQRIIFEE 513
           V+TGD    VNEI LP EIAQRI FEE
Sbjct: 327 VITGDAYKRVNEIGLPFEIAQRITFEE 353



 Score = 40.0 bits (92), Expect(2) = 2e-09
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
 Frame = -3

Query: 495 KLFIRHSDGVSMHSIREDLKGHTLL------DKLYIDELRMWMSRSLNGHQVHT----NI 346
           KL + + DG+S +S+RE  KGHT L       +  +D   ++++R    H+ H+    ++
Sbjct: 370 KLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK-HSLQALSV 428

Query: 345 FKHFSICS*RSTVKINPLICGYLF*PRLYSYILTF--SNLLQEQRRWELFAVEQK----- 187
           + H        TVKINPLICG L        +  F   +L  +    ELF+VE++     
Sbjct: 429 YVHDD-----HTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSH 483

Query: 186 TAQLS*WLLLANDAF-----AVENFFFD--TAKWVAMFVSTT*QQPA 67
           +  L+  L LA D+        E +F +   A+ + MFVS +  +PA
Sbjct: 484 SGNLN--LQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPA 528


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score = 57.8 bits (138), Expect = 5e-06
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 30/202 (14%)
 Frame = -1

Query: 1028 EILDNFSEDTRK---GKGYFTQDECILQKSPVPPN---LPVDT*DL*WN*QYVF*YICID 867
            EI+    ++T+K   GKGYF QD  IL+  PVPPN   +PV           V   + I 
Sbjct: 268  EIIKRLPQETKKKLAGKGYFPQDGYILKYLPVPPNCLSVPV-----------VSDGVSIM 316

Query: 866  TRDMVLQI*SFIRLT*MICTVNSCGVSSC*GNW*DSRD--------------------IK 747
            + D  L I   +     +   +  G  +   +  ++ D                    I+
Sbjct: 317  SSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIE 376

Query: 746  MRSGISKEVRDYATKALFEKVKNIF*QQXXXXXXXXXXXXXXXXXXXFRVYSSGNVVTGD 567
               G++KE+ D +TKA  EK++ +F ++                      +SS NV+TGD
Sbjct: 377  THYGVNKELNDSSTKAWLEKMRTLFIRKGSG-------------------FSSRNVITGD 417

Query: 566  ----VNEIVLPLEIAQRIIFEE 513
                +NE+ +PLE+AQRI FEE
Sbjct: 418  GYKKINEVGIPLEVAQRITFEE 439