BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024023
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat...    87   2e-15
ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat...    87   2e-15
ref|XP_003610566.1| Pentatricopeptide repeat-containing protein ...    84   1e-14
ref|XP_003593079.1| Pentatricopeptide repeat-containing protein ...    83   2e-14
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi...    83   3e-14

>ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 427

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 39/62 (62%), Positives = 48/62 (77%)
 Frame = +3

Query: 114 SLILGEIAAKHLFEIEPENTGNYTLLANIYASMDRWDDAETVRKIASEKGFRKSPGCSWI 293
           +L +GEIAAKHLFE+EPENTGNY LLAN YA M  W++AE VR +  E+G +K PG SW+
Sbjct: 364 NLEVGEIAAKHLFEMEPENTGNYVLLANTYAQMKEWNEAEKVRNVMVERGIKKFPGYSWV 423

Query: 294 *R 299
            R
Sbjct: 424 SR 425


>ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 456

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 39/62 (62%), Positives = 48/62 (77%)
 Frame = +3

Query: 114 SLILGEIAAKHLFEIEPENTGNYTLLANIYASMDRWDDAETVRKIASEKGFRKSPGCSWI 293
           +L +GEIAAKHLFE+EPENTGNY LLAN YA M  W++AE VR +  E+G +K PG SW+
Sbjct: 393 NLEVGEIAAKHLFEMEPENTGNYVLLANTYAQMKEWNEAEKVRNVMVERGIKKFPGYSWV 452

Query: 294 *R 299
            R
Sbjct: 453 SR 454


>ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355511621|gb|AES92763.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 598

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
 Frame = +3

Query: 84  TWVSM---SRPIISLILGEIAAKHLFEIEPENTGNYTLLANIYASMDRWDDAETVRKIAS 254
           TW S+    R   ++ LGEIAA+HLFEI+P ++GNY LLAN YAS D+W+ AE V+K+ S
Sbjct: 481 TWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMS 540

Query: 255 EKGFRKSPGCSWI*REDQSR 314
           +KG +K  G SWI RE + +
Sbjct: 541 KKGMKKPSGYSWIQRETKGQ 560


>ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124360447|gb|ABN08457.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355482127|gb|AES63330.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 558

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
 Frame = +3

Query: 84  TWVSM---SRPIISLILGEIAAKHLFEIEPENTGNYTLLANIYASMDRWDDAETVRKIAS 254
           TW S+    R   ++ LGEIAA+HLFEI+P ++GNY LLAN YAS D+W+ AE V+K+ S
Sbjct: 481 TWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKKLMS 540

Query: 255 EKGFRKSPGCSWI*RE 302
           +KG +K  G SWI RE
Sbjct: 541 KKGMKKPSGYSWIQRE 556


>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = +3

Query: 126 GEIAAKHLFEIEPENTGNYTLLANIYASMDRWDDAETVRKIASEKGFRKSPGCSWI 293
           GEIAA+H FE+EP+ TG  +LL+NIYAS +RWDD + +RK+  EKGF K PGCSW+
Sbjct: 522 GEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWM 577