BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023958
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...    99   5e-19
ref|XP_002884496.1| pentatricopeptide repeat-containing protein ...    97   1e-18
ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th...    97   1e-18
emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]    97   1e-18
gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thal...    97   1e-18

>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/114 (41%), Positives = 73/114 (64%)
 Frame = +3

Query: 3   KHLKQIHAQLIRTSLIQDTFILSRIISLFNNIPSTHLNIHYARCIFNQIYNPNIFMWNTM 182
           KHLKQ HAQ+  T L  +TF LSR+++  ++    H ++ YA  +F QI NP + ++NT+
Sbjct: 19  KHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNTL 78

Query: 183 IRSYVQNGEFRDAVLVFKEMLSKGYFPDTYTYPIVIKACCAQVYGLGFGEMVHG 344
           I++++ N +F+ A+ VF +ML     PD YT P V+KA C   +   FG+M+HG
Sbjct: 79  IKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKA-CGTFHDCSFGKMIHG 131


>ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330336|gb|EFH60755.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/118 (39%), Positives = 76/118 (64%)
 Frame = +3

Query: 9   LKQIHAQLIRTSLIQDTFILSRIISLFNNIPSTHLNIHYARCIFNQIYNPNIFMWNTMIR 188
           L Q+H  +I++S+I++   LSR+I      P T +N+ YAR +F  I  P++++WN+MIR
Sbjct: 21  LNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPET-MNLSYARSVFESIDCPSVYIWNSMIR 79

Query: 189 SYVQNGEFRDAVLVFKEMLSKGYFPDTYTYPIVIKACCAQVYGLGFGEMVHGQVLRNG 362
            Y  +     A++ ++EML KGY PD +T+P V+KA C+ +  + FG  VHG V++ G
Sbjct: 80  GYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA-CSGLRDIQFGSCVHGFVVKTG 136



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
 Frame = +3

Query: 87  FNNIPSTHLNIHYARC--------IFNQIYNPNIFMWNTMIRSYVQNGEFRDAVLVFKEM 242
           FN I +T L   YA+C        +F+ +   N+  WN++I  Y QNG+  +A+ +F +M
Sbjct: 231 FNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDM 290

Query: 243 LSKGYFPDTYTYPIVIKAC----CAQVYGLGFGEMVHGQVLRNG 362
           L  G  PD  T+  VI+A     C+Q+     G+ +H  V + G
Sbjct: 291 LDLGIAPDKVTFFSVIRASMIQGCSQL-----GQTIHAYVSKTG 329


>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
           gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g05240 gi|332640689|gb|AEE74210.1|
           mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/118 (39%), Positives = 76/118 (64%)
 Frame = +3

Query: 9   LKQIHAQLIRTSLIQDTFILSRIISLFNNIPSTHLNIHYARCIFNQIYNPNIFMWNTMIR 188
           L Q+H  +I++S+I++   LSR+I      P T +N+ YAR +F  I  P++++WN+MIR
Sbjct: 22  LNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPET-MNLSYARSVFESIDCPSVYIWNSMIR 80

Query: 189 SYVQNGEFRDAVLVFKEMLSKGYFPDTYTYPIVIKACCAQVYGLGFGEMVHGQVLRNG 362
            Y  +     A++ ++EML KGY PD +T+P V+KA C+ +  + FG  VHG V++ G
Sbjct: 81  GYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA-CSGLRDIQFGSCVHGFVVKTG 137


>emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 51/116 (43%), Positives = 74/116 (63%)
 Frame = +3

Query: 15  QIHAQLIRTSLIQDTFILSRIISLFNNIPSTHLNIHYARCIFNQIYNPNIFMWNTMIRSY 194
           QIHAQLI T+LI DTF  SR++   +++ S  LN++YA  +F QI+ PN F+ NTM++ Y
Sbjct: 29  QIHAQLITTNLISDTFAASRLL---DSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCY 85

Query: 195 VQNGEFRDAVLVFKEMLSKGYFPDTYTYPIVIKACCAQVYGLGFGEMVHGQVLRNG 362
            ++     A+  + EM  KG   D YTYP V+KAC A + GL  G +V G+ ++ G
Sbjct: 86  TESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGA-MCGLLEGGLVQGEAVKRG 140


>gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/118 (39%), Positives = 76/118 (64%)
 Frame = +3

Query: 9   LKQIHAQLIRTSLIQDTFILSRIISLFNNIPSTHLNIHYARCIFNQIYNPNIFMWNTMIR 188
           L Q+H  +I++S+I++   LSR+I      P T +N+ YAR +F  I  P++++WN+MIR
Sbjct: 22  LNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPET-MNLSYARSVFESIDCPSVYIWNSMIR 80

Query: 189 SYVQNGEFRDAVLVFKEMLSKGYFPDTYTYPIVIKACCAQVYGLGFGEMVHGQVLRNG 362
            Y  +     A++ ++EML KGY PD +T+P V+KA C+ +  + FG  VHG V++ G
Sbjct: 81  GYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA-CSGLRDIQFGSCVHGFVVKTG 137