BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023952
         (691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    82   8e-14
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    78   1e-12
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    77   3e-12
gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indi...    73   5e-11
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...    72   8e-11

>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 82.4 bits (202), Expect = 8e-14
 Identities = 40/148 (27%), Positives = 64/148 (43%)
 Frame = -2

Query: 684  KQNPHLWKQLWNTDTTERVKLFFWKAITNSLPTRENLRNRTVTNSATCLRCNNQVESTSH 505
            K+N   W + W +D   + K F W+ +  +L T  NLR R +     C  C    E+ SH
Sbjct: 1048 KENRQFWNKFWASDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMCSLCKQDKENESH 1107

Query: 504  ALFHCNMLRHIWHASKLSIRTDHWXXXXXXXXXXXXXXXNLHDKTILRNTISNFATTMFS 325
                CN+ RH+W +S L IR                      +  +    +S F  T+++
Sbjct: 1108 LFRDCNISRHVWASSLLGIRICPMTVISIEDWIKNFLKLLWKEDGVKSPRVSEFIATLWA 1167

Query: 324  IWISRNDNVFNQKHTNVFSIIRRAITFI 241
            IWI RN+ +F  +  N  +I+   I  +
Sbjct: 1168 IWIHRNNVIFRSEEVNPVAIMNLKIALL 1195


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 4/196 (2%)
 Frame = -2

Query: 666  WKQLWNTDTTERVKLFFWKAITNSLPTRENLRNRTVTNSATCLRCNNQVESTSHALFHCN 487
            W  LWN     +VK F W++  N+LPTR  L++R V  + TC  C N+ E + H  F+C 
Sbjct: 1417 WVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCT 1476

Query: 486  MLRHIWHASKLSIRTDHWXXXXXXXXXXXXXXXNLHDKTILRNTISN----FATTMFSIW 319
              R  W    L      W                + +  IL+   S+    +A  M+SIW
Sbjct: 1477 KSRQCWQQLGL------WSKVQQKAQLNLSFGVTMFE--ILQELDSSQRVIWACVMWSIW 1528

Query: 318  ISRNDNVFNQKHTNVFSIIRRAITFITNNEKPFFKNNHLHMWPQINNNWHYLTTDASWDC 139
              RND ++  +     ++  R +  +T  +      N   +W + +        DA++  
Sbjct: 1529 KQRNDCIWRNEVMTTAAVRDRGLNLLTGWQ------NAQDIWRKPDEGHFKCNVDAAFFK 1582

Query: 138  NTNQVGIGFSLWNNFG 91
             +N+VGIG  + ++ G
Sbjct: 1583 ESNRVGIGICIRDDSG 1598


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 11/211 (5%)
 Frame = -2

Query: 690 ENKQNPHLWKQLWNTDTTERVKLFFWKAITNSLPTRENLRNRTVTNSATCLRCNNQVEST 511
           E   NP +++++W + T+ +++ F WK ++NSLP    L  R ++  + C+RC +  E+ 
Sbjct: 247 EPSLNP-IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETV 305

Query: 510 SHALFHCNMLRHIWHASKLSIRT-DHWXXXXXXXXXXXXXXXNLHDKTILRNTISNFATT 334
           +H LF C   R  W  S + I     W               N + +    + +  +   
Sbjct: 306 NHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPW--L 363

Query: 333 MFSIWISRNDNVFNQKHTNVFSIIRRAITFITN----------NEKPFFKNNHLHMWPQI 184
           ++ +W +RN+ VF  +  N   ++RRA   +              KP    +    W   
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423

Query: 183 NNNWHYLTTDASWDCNTNQVGIGFSLWNNFG 91
            + W    TDA+W+ +  + GIG+ L N  G
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKG 454


>gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indica Group]
          Length = 314

 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 26/221 (11%)
 Frame = -2

Query: 666 WKQLWNTDTTERVKLFFWKAITNSLPTRENLRNRTVTNSATCLRCNNQVESTSHALFHCN 487
           WK++W  +  ++V++F WKAI+NSLPT +N + R +   +TC  C  + E  +HAL HC 
Sbjct: 56  WKRIWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQ 115

Query: 486 MLRHIWHASKLSIRTDHWXXXXXXXXXXXXXXXNLHDKTILRNTISNFATTMFSIWISRN 307
             R++W A   +    H                    + + +   + F   M+ IW +RN
Sbjct: 116 QARNLWSAMYSARAISHDVNSAWSGTDWILNLL----EVLPKEEDAMFLMLMWRIWHNRN 171

Query: 306 DNVFNQ-------KHTNVFSIIRRAITFITNNEKPFFKNNHL------------------ 202
           +    +           +FS +    T     +    K   +                  
Sbjct: 172 EITHGKSIAPVAVSQRFIFSYVSSLTTIKQYPQADIIKGKQVAHPDRIRLPSQAPPAVSS 231

Query: 201 -HMWPQINNNWHYLTTDASWDCNTNQVGIGFSLWNNFGYYI 82
              W + +  W  L  D S+  +  + GIG  L ++ G  I
Sbjct: 232 PRRWEKPSTRWMKLNVDGSFQASYGKGGIGAVLRDSSGNVI 272


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1469

 Score = 72.4 bits (176), Expect = 8e-11
 Identities = 28/68 (41%), Positives = 44/68 (64%)
 Frame = -2

Query: 666  WKQLWNTDTTERVKLFFWKAITNSLPTRENLRNRTVTNSATCLRCNNQVESTSHALFHCN 487
            WK++W  +  ++V++F WKAI+NSLPT +N + R +   +TC  C  + E  +HAL HC 
Sbjct: 1191 WKRIWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQ 1250

Query: 486  MLRHIWHA 463
              R++W A
Sbjct: 1251 QARNLWSA 1258