BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023941
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811...    70   2e-10
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    65   6e-09
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    64   1e-08
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    62   5e-08
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    62   6e-08

>ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811508 [Glycine max]
          Length = 1441

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/103 (33%), Positives = 58/103 (56%)
 Frame = -2

Query: 313 TAVHAHPKHHGRKIQWEMLAAIGDTVQGPWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLT 134
           TAV+A  +   RK+ W+ L AI    QGPW + GDFN V   +D++GG+ VT ++ + L 
Sbjct: 446 TAVYALNQLDRRKVLWKDLEAIHKHQQGPWCVIGDFNNVTKAQDRIGGKAVTESEYIDLL 505

Query: 133 DMLDRCTLMHYAPCRKCFSWTNKRDGLARVAQTIDHLFCNVEW 5
           +M++   L       + ++WTNK+  +  +   ID +  N+ W
Sbjct: 506 NMMETTCLAEMDTTGEFYTWTNKQ-VIGTIYSRIDRVLGNLNW 547


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/103 (33%), Positives = 51/103 (49%)
 Frame = -2

Query: 313 TAVHAHPKHHGRKIQWEMLAAIGDTVQGPWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLT 134
           + V+  P    RKI WE L+ IG   +  W M GDFN++L  E+K+GG     +   P  
Sbjct: 68  SCVYGDPDFKKRKIVWERLSIIGVGRRERWCMVGDFNEILHNEEKIGGPKRCESYFKPFK 127

Query: 133 DMLDRCTLMHYAPCRKCFSWTNKRDGLARVAQTIDHLFCNVEW 5
           +M + C ++  A     F+W  +R  L  +   +D  F N EW
Sbjct: 128 EMHEACGMVELASTGNRFTWAGRRYDL-WIQSRLDRAFGNKEW 169


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/103 (30%), Positives = 49/103 (47%)
 Frame = -2

Query: 313 TAVHAHPKHHGRKIQWEMLAAIGDTVQGPWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLT 134
           + V+ +P    + + WE +  IG   + PW M GDFN +L   +K GG     +  +P T
Sbjct: 104 SCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFT 163

Query: 133 DMLDRCTLMHYAPCRKCFSWTNKRDGLARVAQTIDHLFCNVEW 5
           DMLD C ++        F+W  K + +  +   +D  F N  W
Sbjct: 164 DMLDSCDMLELPSIGNPFTWGGKTNEM-WIQSRLDRCFGNKNW 205


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/104 (28%), Positives = 49/104 (47%)
 Frame = -2

Query: 313 TAVHAHPKHHGRKIQWEMLAAIGDTVQGPWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLT 134
           + ++ HP    R   WE L  +     GPW M GDFN++L   +K GGR  +   +   T
Sbjct: 464 SCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFT 523

Query: 133 DMLDRCTLMHYAPCRKCFSWTNKRDGLARVAQTIDHLFCNVEWR 2
           +M++ C +         +SW  KR     +   +D +F N +W+
Sbjct: 524 NMINCCNMKDLKSKGNPYSWVGKRQN-ETIESCLDRVFINSDWQ 566


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/101 (30%), Positives = 48/101 (47%)
 Frame = -2

Query: 307 VHAHPKHHGRKIQWEMLAAIGDTVQGPWAMFGDFNQVLCQEDKVGGRPVTPAKVMPLTDM 128
           V+  PK   R   W +L  + D  +GPW   GDFN+VLC ++ +G R  +   +      
Sbjct: 110 VYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSC 169

Query: 127 LDRCTLMHYAPCRKCFSWTNKRDGLARVAQTIDHLFCNVEW 5
           LD C L+        F+W+NK+D  +     +D    N E+
Sbjct: 170 LDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEF 210