BLASTX nr result

ID: Coptis23_contig00023914 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023914
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB00554.1| dehydrin [Phaseolus vulgaris]                           54   2e-09
gb|ABS12334.1| dehydrin [Populus davidiana]                            54   2e-08
gb|ABS12342.1| dehydrin [Populus davidiana]                            54   2e-08
gb|ABS12332.1| dehydrin [Populus davidiana]                            54   2e-08
gb|ABS12341.1| dehydrin [Populus davidiana]                            54   2e-08

>gb|AAB00554.1| dehydrin [Phaseolus vulgaris]
          Length = 202

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
 Frame = +1

Query: 1   ETEDNKNFMEKIKEKMPGKKAD---AAPVEYPPTETKVS-QNEVKEHKGIMEKIKE 156
           E+E+ K F+EKIKEK+PG K     AAP   PP  T    + E KE KGI+EKIKE
Sbjct: 127 ESEEKKGFLEKIKEKLPGHKKSEEAAAPPPPPPAATSSEHEGEAKEKKGILEKIKE 182



 Score = 32.3 bits (72), Expect(2) = 2e-09
 Identities = 15/24 (62%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +2

Query: 242 MEKIKEKVPG-HQKGEQEKEIQNG 310
           +EKIKEK+PG H K E+EKE ++G
Sbjct: 177 LEKIKEKLPGYHSKTEEEKEKESG 200


>gb|ABS12334.1| dehydrin [Populus davidiana]
          Length = 227

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
 Frame = +1

Query: 1   ETEDNKNFMEKIKEKMPG-KKADAAPVEYPPTETKV-------SQNEVKEHKGIMEKIKE 156
           E E+ K F++KIKEK+PG KKAD  P   PP    V       S+ + KE KGI+EKIKE
Sbjct: 146 EPEEKKGFLDKIKEKLPGHKKADEVPPPPPPAPEHVSPEAAVSSEGDAKEKKGILEKIKE 205



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 MEKIKEKVPG-HQKGEQEKE 298
           +EKIKEK+PG H K E+EKE
Sbjct: 200 LEKIKEKLPGYHPKTEEEKE 219


>gb|ABS12342.1| dehydrin [Populus davidiana]
          Length = 227

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
 Frame = +1

Query: 1   ETEDNKNFMEKIKEKMPG-KKADAAPVEYPPTETKV-------SQNEVKEHKGIMEKIKE 156
           E E+ K F++KIKEK+PG KKAD  P   PP    V       S+ + KE KGI+EKIKE
Sbjct: 146 EPEEKKGFLDKIKEKLPGHKKADEVPPPPPPAPEHVSPEAAVSSEGDAKEKKGILEKIKE 205



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 MEKIKEKVPG-HQKGEQEKE 298
           +EKIKEK+PG H K E+EKE
Sbjct: 200 LEKIKEKLPGYHPKTEEEKE 219


>gb|ABS12332.1| dehydrin [Populus davidiana]
          Length = 227

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
 Frame = +1

Query: 1   ETEDNKNFMEKIKEKMPG-KKADAAPVEYPPTETKV-------SQNEVKEHKGIMEKIKE 156
           E E+ K F++KIKEK+PG KKAD  P   PP    V       S+ + KE KGI+EKIKE
Sbjct: 146 EPEEKKGFLDKIKEKLPGHKKADEVPPPPPPAPEHVSPEAAVSSEGDAKEKKGILEKIKE 205



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 MEKIKEKVPG-HQKGEQEKE 298
           +EKIKEK+PG H K E+EKE
Sbjct: 200 LEKIKEKLPGYHPKTEEEKE 219


>gb|ABS12341.1| dehydrin [Populus davidiana]
          Length = 227

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
 Frame = +1

Query: 1   ETEDNKNFMEKIKEKMPG-KKADAAPVEYPPTETKV-------SQNEVKEHKGIMEKIKE 156
           E E+ K F++KIKEK+PG KKAD  P   PP    V       S+ + KE KGI+EKIKE
Sbjct: 146 EPEEKKGFLDKIKEKLPGHKKADEVPPPPPPAPEHVSPEAAVSSEGDAKEKKGILEKIKE 205



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 MEKIKEKVPG-HQKGEQEKE 298
           +EKIKEK+PG H K E+EKE
Sbjct: 200 LEKIKEKLPGYHPKTEEEKE 219


Top