BLASTX nr result
ID: Coptis23_contig00023907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00023907
(521 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi... 199 8e-62
emb|CBI24939.3| unnamed protein product [Vitis vinifera] 199 8e-62
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ... 180 5e-55
gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group... 187 6e-55
gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indi... 187 6e-55
>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 199 bits (507), Expect(2) = 8e-62
Identities = 92/137 (67%), Positives = 116/137 (84%)
Frame = +2
Query: 110 FEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFN 289
FE ME L +M ++ CLPD++T+NSF+WAYGN G+I++ME+WY++FQLM ++ DIKTFN
Sbjct: 250 FELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFN 309
Query: 290 ILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYK 469
ILIRSYGKA M+ KM V++FMKKRF SPT VTFNI+IEMFGRVGNI KME +F MK++
Sbjct: 310 ILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQ 369
Query: 470 GVKPNSVTYCSLVNFYS 520
GVKPNS+TYCSLV+ YS
Sbjct: 370 GVKPNSITYCSLVSAYS 386
Score = 62.8 bits (151), Expect(2) = 8e-62
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEI 110
RFDLIER+ MSYLGI+CS VTYNT+IDGYGKA++
Sbjct: 214 RFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADM 249
Score = 52.0 bits (123), Expect(2) = 3e-07
Identities = 30/108 (27%), Positives = 55/108 (50%)
Frame = +2
Query: 107 DFEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTF 286
+ E+ME+ M K+ P+ T S + AY G +K+++ + + +V D F
Sbjct: 355 NIEKMEEFFLKM-KHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFF 413
Query: 287 NILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNI 430
N ++ +YG+A +M ++ MK+R C P +TF +I+ + G I
Sbjct: 414 NCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMI 461
Score = 27.3 bits (59), Expect(2) = 3e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKA 104
+ + +E+ + +GI+ I T+N LI YGKA
Sbjct: 285 QIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKA 318
>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 199 bits (507), Expect(2) = 8e-62
Identities = 92/137 (67%), Positives = 116/137 (84%)
Frame = +2
Query: 110 FEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFN 289
FE ME L +M ++ CLPD++T+NSF+WAYGN G+I++ME+WY++FQLM ++ DIKTFN
Sbjct: 250 FELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFN 309
Query: 290 ILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYK 469
ILIRSYGKA M+ KM V++FMKKRF SPT VTFNI+IEMFGRVGNI KME +F MK++
Sbjct: 310 ILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQ 369
Query: 470 GVKPNSVTYCSLVNFYS 520
GVKPNS+TYCSLV+ YS
Sbjct: 370 GVKPNSITYCSLVSAYS 386
Score = 62.8 bits (151), Expect(2) = 8e-62
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEI 110
RFDLIER+ MSYLGI+CS VTYNT+IDGYGKA++
Sbjct: 214 RFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADM 249
Score = 52.0 bits (123), Expect(2) = 3e-07
Identities = 30/108 (27%), Positives = 55/108 (50%)
Frame = +2
Query: 107 DFEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTF 286
+ E+ME+ M K+ P+ T S + AY G +K+++ + + +V D F
Sbjct: 355 NIEKMEEFFLKM-KHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFF 413
Query: 287 NILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNI 430
N ++ +YG+A +M ++ MK+R C P +TF +I+ + G I
Sbjct: 414 NCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGMI 461
Score = 27.3 bits (59), Expect(2) = 3e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKA 104
+ + +E+ + +GI+ I T+N LI YGKA
Sbjct: 285 QIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKA 318
>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 511
Score = 180 bits (456), Expect(2) = 5e-55
Identities = 80/137 (58%), Positives = 112/137 (81%)
Frame = +2
Query: 110 FEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFN 289
FEQME L DM +N C PDV+T+NS + +YGN G+I +ME+WY++FQLM ++ DIKTFN
Sbjct: 254 FEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFN 313
Query: 290 ILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYK 469
++I+SYGKA M++KM+ V+DFM++RF +PT VT+N +IE++G+ G I KM+ +F+ MK+
Sbjct: 314 MMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHI 373
Query: 470 GVKPNSVTYCSLVNFYS 520
G+KPNSVTYCSLVN YS
Sbjct: 374 GMKPNSVTYCSLVNAYS 390
Score = 59.7 bits (143), Expect(2) = 5e-55
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEILNRWRN 128
RFDLIERVL +MSY GI+C+ VTYN++IDGYGKA + + N
Sbjct: 218 RFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMEN 259
Score = 64.7 bits (156), Expect(2) = 2e-11
Identities = 31/132 (23%), Positives = 70/132 (53%)
Frame = +2
Query: 125 KLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFNILIRS 304
K + D + P + T N+ + YG GEI++M++ ++ + + ++ + T+ L+ +
Sbjct: 329 KSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNA 388
Query: 305 YGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYKGVKPN 484
Y KA + K++ ++ ++ T FN +I +G+VG++ KM F M+ + +P+
Sbjct: 389 YSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCEPD 448
Query: 485 SVTYCSLVNFYS 520
T+ ++ Y+
Sbjct: 449 RTTFTCMIQAYN 460
Score = 28.9 bits (63), Expect(2) = 2e-11
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEILNRWRN 128
+ D +E+ + + IK I T+N +I YGKA + ++ ++
Sbjct: 289 KIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKS 330
Score = 63.9 bits (154), Expect = 1e-08
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Frame = +2
Query: 110 FEQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGEIKEMERWYEKFQLMEVQSDIKTFN 289
F + DM C PDVYT + + +ER ++ + T+N
Sbjct: 183 FRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYN 242
Query: 290 ILIRSYGKARMHNKME-KVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKY 466
+I YGKA M +ME + D ++ C P T N LI +G G I KME ++ +
Sbjct: 243 SIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQL 302
Query: 467 KGVKPNSVTYCSLVNFY 517
+KP+ T+ ++ Y
Sbjct: 303 MSIKPDIKTFNMMIKSY 319
>gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein
OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 187 bits (476), Expect(2) = 6e-55
Identities = 88/137 (64%), Positives = 107/137 (78%), Gaps = 1/137 (0%)
Frame = +2
Query: 113 EQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGE-IKEMERWYEKFQLMEVQSDIKTFN 289
E+ME L M ++ +PD+YTMNS +WAYGN G I EMERWY +FQLM V+ D +TFN
Sbjct: 212 EEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFN 271
Query: 290 ILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYK 469
I+I+SYG A+MH+KM V+ +MKK F SPT VTFNI+IE FGR GNI KMEYYFR+MK +
Sbjct: 272 IMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQ 331
Query: 470 GVKPNSVTYCSLVNFYS 520
GVKPN +TYCSLVN YS
Sbjct: 332 GVKPNPITYCSLVNGYS 348
Score = 51.6 bits (122), Expect(2) = 6e-55
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEILNRWRN 128
RFD I +L+ MSYLG++C+ V +N +IDGYGKA +L N
Sbjct: 175 RFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMEN 216
>gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 187 bits (476), Expect(2) = 6e-55
Identities = 88/137 (64%), Positives = 107/137 (78%), Gaps = 1/137 (0%)
Frame = +2
Query: 113 EQMEKLLYDMTKNNKCLPDVYTMNSFLWAYGNVGE-IKEMERWYEKFQLMEVQSDIKTFN 289
E+ME L M ++ +PD+YTMNS +WAYGN G I EMERWY +FQLM V+ D +TFN
Sbjct: 212 EEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFN 271
Query: 290 ILIRSYGKARMHNKMEKVIDFMKKRFCSPTTVTFNILIEMFGRVGNIVKMEYYFRMMKYK 469
I+I+SYG A+MH+KM V+ +MKK F SPT VTFNI+IE FGR GNI KMEYYFR+MK +
Sbjct: 272 IMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQ 331
Query: 470 GVKPNSVTYCSLVNFYS 520
GVKPN +TYCSLVN YS
Sbjct: 332 GVKPNPITYCSLVNGYS 348
Score = 51.6 bits (122), Expect(2) = 6e-55
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 3 RFDLIERVLNNMSYLGIKCSIVTYNTLIDGYGKAEILNRWRN 128
RFD I +L+ MSYLG++C+ V +N +IDGYGKA +L N
Sbjct: 175 RFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMEN 216