BLASTX nr result

ID: Coptis23_contig00023876 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023876
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271998.1| PREDICTED: uncharacterized protein LOC100242...    74   2e-11
ref|XP_002281775.1| PREDICTED: uncharacterized protein LOC100242...    68   9e-10
emb|CAN78966.1| hypothetical protein VITISV_019939 [Vitis vinifera]    68   9e-10
gb|ABK28289.1| unknown [Arabidopsis thaliana]                          67   2e-09
ref|NP_199219.1| uncharacterized protein [Arabidopsis thaliana] ...    67   2e-09

>ref|XP_002271998.1| PREDICTED: uncharacterized protein LOC100242917 [Vitis vinifera]
          Length = 142

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = -1

Query: 413 TLFGQKWDPARAEAAPVSIKESNKSRNKIRARAEPLAINRKCYEEVANLLKSEGTQISGV 234
           TL G+KWDP RA+AAPV ++   K + K + RAEP A     Y EVA+LLK +G  + G+
Sbjct: 71  TLLGEKWDPDRADAAPVPVEFKRKEKGKGKGRAEPSAEAYNRYVEVADLLKRDGAHLPGI 130

Query: 233 VNPSQLVSWLQM 198
           VNP+QL  +L M
Sbjct: 131 VNPTQLGRFLHM 142


>ref|XP_002281775.1| PREDICTED: uncharacterized protein LOC100242675 [Vitis vinifera]
          Length = 153

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
 Frame = -1

Query: 413 TLFGQKWDPARAEAAPVSIKESNKSRNK---IRARAEPLAINRK---CYEEVANLLKSEG 252
           TLFGQK DPARAEA P+    +   R K   I   AEP A   K    Y E+A+LLK++G
Sbjct: 71  TLFGQKLDPARAEAVPLPSSAAEGKRMKLSQIEEAAEPSARPAKQHQSYGELASLLKTDG 130

Query: 251 TQISGVVNPSQLVSWLQM 198
             I G+VNP+QL  W+QM
Sbjct: 131 AHIPGIVNPTQLARWIQM 148


>emb|CAN78966.1| hypothetical protein VITISV_019939 [Vitis vinifera]
          Length = 153

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
 Frame = -1

Query: 413 TLFGQKWDPARAEAAPVSIKESNKSRNK---IRARAEPLAINRK---CYEEVANLLKSEG 252
           TLFGQK DPARAEA P+    +   R K   I   AEP A   K    Y E+A+LLK++G
Sbjct: 71  TLFGQKLDPARAEAVPLPSSAAEGKRMKLSQIEEAAEPSARPAKQHQSYGELASLLKTDG 130

Query: 251 TQISGVVNPSQLVSWLQM 198
             I G+VNP+QL  W+QM
Sbjct: 131 AHIPGIVNPTQLARWIQM 148


>gb|ABK28289.1| unknown [Arabidopsis thaliana]
          Length = 151

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 48/72 (66%)
 Frame = -1

Query: 413 TLFGQKWDPARAEAAPVSIKESNKSRNKIRARAEPLAINRKCYEEVANLLKSEGTQISGV 234
           TLFG+ W+P +A+A P++ +  +  +NK     EP    R+ Y EVAN+L+ +GT + G+
Sbjct: 79  TLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGI 138

Query: 233 VNPSQLVSWLQM 198
           VNPSQL  +L++
Sbjct: 139 VNPSQLARFLKL 150


>ref|NP_199219.1| uncharacterized protein [Arabidopsis thaliana]
           gi|9758565|dbj|BAB09066.1| unnamed protein product
           [Arabidopsis thaliana] gi|26451331|dbj|BAC42766.1|
           unknown protein [Arabidopsis thaliana]
           gi|28973277|gb|AAO63963.1| unknown protein [Arabidopsis
           thaliana] gi|91805689|gb|ABE65573.1| unknown
           [Arabidopsis thaliana] gi|332007670|gb|AED95053.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 150

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 48/72 (66%)
 Frame = -1

Query: 413 TLFGQKWDPARAEAAPVSIKESNKSRNKIRARAEPLAINRKCYEEVANLLKSEGTQISGV 234
           TLFG+ W+P +A+A P++ +  +  +NK     EP    R+ Y EVAN+L+ +GT + G+
Sbjct: 79  TLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGI 138

Query: 233 VNPSQLVSWLQM 198
           VNPSQL  +L++
Sbjct: 139 VNPSQLARFLKL 150


Top