BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023824
         (654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi...   209   4e-52
ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|2...   206   3e-51
ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab...   204   1e-50
ref|NP_194257.1| pentatricopeptide repeat-containing protein [Ar...   203   3e-50
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   200   2e-49

>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic [Vitis vinifera]
           gi|296084180|emb|CBI24568.3| unnamed protein product
           [Vitis vinifera]
          Length = 516

 Score =  209 bits (532), Expect = 4e-52
 Identities = 99/149 (66%), Positives = 120/149 (80%)
 Frame = -3

Query: 652 FNQMENSNILPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLG 473
           F++M+ +++LPD VTFVSLLS CAHLGLV+DG  LF  M+  YG+ P MEHYACMVNL G
Sbjct: 366 FSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYG 425

Query: 472 RAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFE 293
           RAGLI +AY+I+ K+MEF+AGPTVWGALLYAC  H N+D+G+ AA  LF+LEPDN HNFE
Sbjct: 426 RAGLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFE 485

Query: 292 LLIKIYGNAGRWDKVEKVMQSMADRGLDS 206
           LL+ IY N GR + VEKV + MADRG DS
Sbjct: 486 LLMNIYRNVGRLEDVEKVRKMMADRGFDS 514


>ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  206 bits (524), Expect = 3e-51
 Identities = 100/147 (68%), Positives = 112/147 (76%)
 Frame = -3

Query: 652 FNQMENSNILPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLG 473
           F  ME    LPD +TFVSLLS CAHLGLV+DG  LF  MK +Y I P MEHYACMVNL G
Sbjct: 296 FELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIMEHYACMVNLYG 355

Query: 472 RAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFE 293
           RAGLIN+AY I+  QMEF+AGPTVWGALLY+C  H N+D GE AA  LFDLEPDN HNFE
Sbjct: 356 RAGLINEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFDLEPDNEHNFE 415

Query: 292 LLIKIYGNAGRWDKVEKVMQSMADRGL 212
           LL+KIY NAGR +  E+V + M DRGL
Sbjct: 416 LLMKIYDNAGRLEDAERVRKMMVDRGL 442


>ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
            lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein
            ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata]
          Length = 758

 Score =  204 bits (519), Expect = 1e-50
 Identities = 91/149 (61%), Positives = 119/149 (79%)
 Frame = -3

Query: 652  FNQMENSNILPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLG 473
            F QM++++  PD +TFVS+LS+CA+ G+VEDG  LF  M   YGI P+MEHYACMVNL G
Sbjct: 610  FEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKMEHYACMVNLYG 669

Query: 472  RAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFE 293
            RAG++ +AY ++V++MEF+AGPTVWGALLYAC  HGN D+GE +A RLF+LEPDN HNFE
Sbjct: 670  RAGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFELEPDNEHNFE 729

Query: 292  LLIKIYGNAGRWDKVEKVMQSMADRGLDS 206
            LL++IY  A R + VE+V Q + DRGL++
Sbjct: 730  LLMRIYSKAKRAEDVERVRQMLVDRGLET 758


>ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g25270, chloroplastic; Flags: Precursor
           gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis
           thaliana] gi|7269378|emb|CAB81338.1| putative protein
           [Arabidopsis thaliana] gi|332659633|gb|AEE85033.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 527

 Score =  203 bits (516), Expect = 3e-50
 Identities = 93/149 (62%), Positives = 115/149 (77%)
 Frame = -3

Query: 652 FNQMENSNILPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLG 473
           F QM  +N  PD +TFVS+LS+CA+ G+VEDG  LF  M   YGI P+MEHYACMVNL G
Sbjct: 379 FEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYG 438

Query: 472 RAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFE 293
           RAG++ +AY ++V++M  +AGPTVWGALLYAC  HGN D+GE AA RLF+LEPDN HNFE
Sbjct: 439 RAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFE 498

Query: 292 LLIKIYGNAGRWDKVEKVMQSMADRGLDS 206
           LLI+IY  A R + VE+V Q M DRGL++
Sbjct: 499 LLIRIYSKAKRAEDVERVRQMMVDRGLET 527


>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  200 bits (509), Expect = 2e-49
 Identities = 94/149 (63%), Positives = 117/149 (78%)
 Frame = -3

Query: 652 FNQMENSNILPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRMEHYACMVNLLG 473
           F  ME+  + PD VTFVSLLS CAHLGLV++G EL+  MK +YGI+P +EHYACMVNL G
Sbjct: 341 FEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIEHYACMVNLYG 400

Query: 472 RAGLINDAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFDLEPDNAHNFE 293
           RAG+I +AY I+ K ME +AGPT+WGALLYAC  H ++D+ E AA RLF+LEPDN  NFE
Sbjct: 401 RAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFE 460

Query: 292 LLIKIYGNAGRWDKVEKVMQSMADRGLDS 206
           LL+KIYGNAGR +  ++V   MA+RGL+S
Sbjct: 461 LLMKIYGNAGRSEDEKRVKLMMAERGLNS 489