BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023820
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002535295.1| conserved hypothetical protein [Ricinus comm...   118   4e-25
emb|CAA27743.1| URF-1 [Citrullus lanatus]                              90   2e-16
gb|AFW63421.1| hypothetical protein ZEAMMB73_397358 [Zea mays] g...    88   6e-16
sp|P08834.1|NU1M_CITLA RecName: Full=NADH-ubiquinone oxidoreduct...    88   8e-16
ref|YP_717140.1| hypothetical protein BrnapMp043 [Brassica napus...    78   7e-13

>ref|XP_002535295.1| conserved hypothetical protein [Ricinus communis]
           gi|223523525|gb|EEF27089.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 139

 Score =  118 bits (296), Expect = 4e-25
 Identities = 60/85 (70%), Positives = 67/85 (78%)
 Frame = -2

Query: 355 AARTTFSIFLFGAGSVRRDTREMLSISPKQIPPPMLPRSAYRGIEREDPGPEQVGLGYRA 176
           +ARTTFSI +F AGSVRRD RE+   S     PPMLP+SAYRGIEREDPGPEQVGLGYRA
Sbjct: 30  SARTTFSIVIFLAGSVRRDKREIFYQSKADTAPPMLPQSAYRGIEREDPGPEQVGLGYRA 89

Query: 175 VSAVGGDRGRARTVHSGGMIKSYIV 101
           VSA+GGDRGRAR + S   + SY V
Sbjct: 90  VSAMGGDRGRARALRSAAQMVSYEV 114


>emb|CAA27743.1| URF-1 [Citrullus lanatus]
          Length = 316

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 65/123 (52%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
 Frame = -3

Query: 354 RQEPLF-LFFFLGRVRSGGTQERCFLSVQSRYRPPCSHDP---LTEE*KGRTRGQSKLGW 187
           RQEP F   FF G  +    +ERCF SV+SRYRPP  H P   L    KGRT  ++   W
Sbjct: 30  RQEPFFDCDFFCGFGQVIEAKERCFPSVKSRYRPP--HAPPVRLPRNRKGRTGARAS--W 85

Query: 186 -GIEP*ARWGVTEDVLVRFIAGV**SRILLGTFTPLYSKYASLGALRSAAQMVPYEVSIG 10
            G++   R G                  LLGTFTPLYSKYA LGALRSAAQMVPYEVSIG
Sbjct: 86  VGVKSRKRGGG-----------------LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIG 128

Query: 9   LIL 1
           LIL
Sbjct: 129 LIL 131


>gb|AFW63421.1| hypothetical protein ZEAMMB73_397358 [Zea mays]
           gi|413923490|gb|AFW63422.1| hypothetical protein
           ZEAMMB73_397358 [Zea mays] gi|413923799|gb|AFW63731.1|
           hypothetical protein ZEAMMB73_879039 [Zea mays]
           gi|413923800|gb|AFW63732.1| hypothetical protein
           ZEAMMB73_879039 [Zea mays]
          Length = 172

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 55/104 (52%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
 Frame = -3

Query: 309 SGGTQERCFLSVQSRYRPPCSHDPLTEE*KGRTRGQSKLGWGIEP*ARWGVTEDVLVRFI 130
           SGG ++     +  +  PP  H PLTEE      G  ++G G    +  GVTEDVLVRFI
Sbjct: 53  SGGKKKDMLFPISPKRIPPSFHGPLTEEEMREDPGPEQVGLGYRAVSAVGVTEDVLVRFI 112

Query: 129 AGV**SRILLGTFT-PLYSKYASLGALRSAAQMVPYEVSIGLIL 1
            G     IL+  +  PLYSKYA LGALRSAAQMV YEVSIGLIL
Sbjct: 113 VGY---DILVDCWERPLYSKYAFLGALRSAAQMVSYEVSIGLIL 153


>sp|P08834.1|NU1M_CITLA RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName:
           Full=NADH dehydrogenase subunit 1
          Length = 316

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 64/122 (52%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
 Frame = -3

Query: 351 QEPLF-LFFFLGRVRSGGTQERCFLSVQSRYRPPCSHDP---LTEE*KGRTRGQSKLGW- 187
           QEP F   FF G  +    +ERCF SV+SRYRPP  H P   L    KGRT  ++   W 
Sbjct: 31  QEPFFDCDFFCGFGQVIEAKERCFPSVKSRYRPP--HAPPVRLPRNRKGRTGARAS--WV 86

Query: 186 GIEP*ARWGVTEDVLVRFIAGV**SRILLGTFTPLYSKYASLGALRSAAQMVPYEVSIGL 7
           G++   R G                  LLGTFTPLYSKYA LGALRSAAQMVPYEVSIGL
Sbjct: 87  GVKSRKRGGG-----------------LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIGL 129

Query: 6   IL 1
           IL
Sbjct: 130 IL 131


>ref|YP_717140.1| hypothetical protein BrnapMp043 [Brassica napus]
           gi|353526443|ref|YP_004927515.1| orf100b (mitochondrion)
           [Brassica oleracea] gi|353526482|ref|YP_004927553.1|
           orf100b (mitochondrion) [Brassica carinata]
           gi|353526689|ref|YP_004927858.1| orf100b (mitochondrion)
           [Brassica rapa subsp. campestris]
           gi|353531371|ref|YP_004927761.1| orf100b (mitochondrion)
           [Brassica juncea] gi|37591087|dbj|BAC98889.1|
           hypothetical protein [Brassica napus]
           gi|335354877|gb|AEH43433.1| orf100b [Brassica rapa
           subsp. campestris] gi|335354988|gb|AEH43543.1| orf100b
           [Brassica oleracea] gi|335355013|gb|AEH43567.1| orf100b
           [Brassica carinata] gi|335355104|gb|AEH43657.1| orf100b
           [Brassica juncea] gi|339511304|emb|CBX48359.1| unnamed
           protein product [Brassica napus]
          Length = 100

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/53 (75%), Positives = 44/53 (83%), Gaps = 2/53 (3%)
 Frame = -1

Query: 335 YFSFWGGFGQEGHKRDAFYQSKADTAP-HAPTIRLPRNRKGGP-GARASWVGV 183
           +  F+GGFGQE  KRDAFYQSK D+AP HAPT RLPRNRKGGP G+RAS VGV
Sbjct: 48  FCDFFGGFGQERQKRDAFYQSKGDSAPRHAPTARLPRNRKGGPGGSRASRVGV 100