BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023761
         (661 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   103   5e-22
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   100   1e-21
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    99   3e-21
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    96   6e-20
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    75   6e-17

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  103 bits (256), Expect(2) = 5e-22
 Identities = 63/132 (47%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
 Frame = +2

Query: 185 YLVESSGELLQVVRVIDY----EKVDSRDFYFTTGFNVFKLDLTVHEWIEVSSLGDRMFF 352
           YLVES  ELL V R +D     E   +   Y TT F V +LDL    W  VSSLGDR  F
Sbjct: 255 YLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALF 314

Query: 353 LGDNYSLSLSVSEMPGCKPNSIYFTDDNREVYLENGLGPHDFGVFNL-DGSIEPLYPKES 529
           LG+N SLSLS  + PGCK N IY+TDD  E   +   G  D G+FNL DGSIEPL     
Sbjct: 315 LGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHF 374

Query: 530 KTLSLSPIFIQP 565
           +     P+++ P
Sbjct: 375 RIRWPPPLWVTP 386



 Score = 26.9 bits (58), Expect(2) = 5e-22
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 6   DVTWTPLH---SYSWLRPISDVIYYKDKFYALHNTGKVVAIDVKHPSSTSLIAFAPKATW 176
           D +WT L    SY+      DVI+++  FYA++  G +   DV   S    I   P+   
Sbjct: 196 DDSWTFLEDAQSYA-----EDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFG 250

Query: 177 G 179
           G
Sbjct: 251 G 251


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  100 bits (250), Expect(2) = 1e-21
 Identities = 62/132 (46%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
 Frame = +2

Query: 185 YLVESSGELLQVVRVIDY----EKVDSRDFYFTTGFNVFKLDLTVHEWIEVSSLGDRMFF 352
           YLVES  ELL V R +D     E   +   Y TT F V +LD     W  VSSLGDR  F
Sbjct: 255 YLVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALF 314

Query: 353 LGDNYSLSLSVSEMPGCKPNSIYFTDDNREVYLENGLGPHDFGVFNL-DGSIEPLYPKES 529
           LG+N SLSLS  + PGCK N IY+TDD  E   +   G  D G+FNL DGSIEPL     
Sbjct: 315 LGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHF 374

Query: 530 KTLSLSPIFIQP 565
           +     P+++ P
Sbjct: 375 RIRWPPPLWVTP 386



 Score = 28.1 bits (61), Expect(2) = 1e-21
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 6   DVTWTPLH---SYSWLRPISDVIYYKDKFYALHNTGKVVAIDVKHPSSTSLIAFAPKATW 176
           D +WT L    SYS      DVI+++  FYA++  G +   DV   S    I   P+   
Sbjct: 196 DDSWTFLEDAQSYS-----EDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVSIIEMPQQFG 250

Query: 177 G 179
           G
Sbjct: 251 G 251


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 98.6 bits (244), Expect(2) = 3e-21
 Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
 Frame = +2

Query: 185 YLVESSGELLQVVRVIDYEKVDSRDFYFTTGFNVFKLDLTVHEWIEVSSLGDRMFFLGDN 364
           YLV S   LL V R +D +       Y T  F VFKLDL    W  V+SLGD M F+G+N
Sbjct: 259 YLVSSGDGLLLVTRYLDLDVEFDIFIYKTARFEVFKLDLNGPRWERVTSLGDMMLFIGEN 318

Query: 365 YSLSLSVSEMPGCKPNSIYFTDDNREVYLENGLGPHDFGVFNL-DGSIEPL--YPKES 529
            SL+LS S + GC  + IY+TDD      +  +G HD G+F L DGSIEPL  YP+ S
Sbjct: 319 SSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNS 376



 Score = 29.3 bits (64), Expect(2) = 3e-21
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 57  DVIYYKDKFYALHNTGKVVAIDVKHPSSTSLIAFAPKATWG 179
           DVIY+   FYA++  G++V  DV   S        P+   G
Sbjct: 215 DVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIETPRQIGG 255


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 95.5 bits (236), Expect(2) = 6e-20
 Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
 Frame = +2

Query: 185 YLVESSGELLQVVRVIDYE-KVDSRDF-----YFTTGFNVFKLDLTVHEWIEVSSLGDRM 346
           YLV S  ELL V R +D E + D  D      Y T  F VF+LD    +W+ +S+LGD+ 
Sbjct: 258 YLVNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKA 317

Query: 347 FFLGDNYSLSLSVSEMPGCKPNSIYFTDDNREVYLENGLGPHDFGVFNL-DGSIEPL--Y 517
            F+G+N SLSLS ++  GC  N IY+TDD  +   +   G HD G+F L D +IEPL  Y
Sbjct: 318 LFIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCY 377

Query: 518 PKE-SKTLSLS-PIFIQP 565
           P+  +  L  S P+++ P
Sbjct: 378 PRNFTSPLQWSPPLWVSP 395



 Score = 27.7 bits (60), Expect(2) = 6e-20
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 3   GDVTWTPLHSYSWLRPISDVIYYKDKFYALHNTGKVVAIDVKHPSSTSLIAFAPKATWG 179
           GD +W+ + +        DVI+    FYA++  G++V  D+   S        P+   G
Sbjct: 198 GDKSWSLVENARSF--CEDVIFVNGMFYAVNKAGQIVICDISSDSPRVSFMETPRQAGG 254


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 74.7 bits (182), Expect(2) = 6e-17
 Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
 Frame = +2

Query: 188 LVESSGELLQVVRVIDYEKVDSRDFYFTTG----FNVFKLDLTVHEWIEVSSLGDRMFFL 355
           LVES GELL V         D     +       F VF+LD    +W+E+ SLGDR+ FL
Sbjct: 248 LVESEGELLLVDTYFTMYHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESLGDRLLFL 307

Query: 356 GDNYSLSLSVSEMPGCKPNSIYFTDDN--REVYLENGLGPHDFGVFNLD-GSIEPL--YP 520
           GD+ S S   S+  GCK NSI FT+ +   +   ++       GVF+LD GSI PL  Y 
Sbjct: 308 GDDSSFSARASDFYGCKGNSICFTNISFFSDAEEDDASRSGTIGVFDLDSGSIGPLSSYA 367

Query: 521 KESKTLSLSPIFIQPT 568
             SKT+   P ++  T
Sbjct: 368 NYSKTIWPPPAWVSST 383



 Score = 38.5 bits (88), Expect(2) = 6e-17
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 3   GDVTWTPLHSYSWLRPISDVIYYKDKFYALHNTGKVVAIDVKHPSS 140
           GD  W  +       P  DVI++  KFYA+ NTG+ V +DV   SS
Sbjct: 187 GDKKWMIIDDMQ--SPYDDVIFFDGKFYAVDNTGRTVVVDVADGSS 230