BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023751
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
emb|CBI30711.3| unnamed protein product [Vitis vinifera]              153   2e-35
ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|2...   143   1e-32

>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  153 bits (386), Expect = 2e-35
 Identities = 73/90 (81%), Positives = 79/90 (87%)
 Frame = -3

Query: 272 RMKEEGCLPDNRYALIIAGDTEKEEVLCGHSEKLAMAYGILNLPYGKTVRVTKNLRVCGD 93
           RMKEEG  P  RYALI A DTEKE  LCGHSEK+AMA+GIL+LP GKTVRVTKNLRVCGD
Sbjct: 727 RMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGD 786

Query: 92  CHEMAKFMSKMFAKEIVLRDSNRFHHFKDG 3
           CHEMAKFMSKM  ++I+LRDSNRFHHFKDG
Sbjct: 787 CHEMAKFMSKMVKRDIILRDSNRFHHFKDG 816


>emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  153 bits (386), Expect = 2e-35
 Identities = 73/90 (81%), Positives = 79/90 (87%)
 Frame = -3

Query: 272 RMKEEGCLPDNRYALIIAGDTEKEEVLCGHSEKLAMAYGILNLPYGKTVRVTKNLRVCGD 93
           RMKEEG  P  RYALI A DTEKE  LCGHSEK+AMA+GIL+LP GKTVRVTKNLRVCGD
Sbjct: 600 RMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGD 659

Query: 92  CHEMAKFMSKMFAKEIVLRDSNRFHHFKDG 3
           CHEMAKFMSKM  ++I+LRDSNRFHHFKDG
Sbjct: 660 CHEMAKFMSKMVKRDIILRDSNRFHHFKDG 689


>ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  145 bits (365), Expect = 4e-33
 Identities = 69/90 (76%), Positives = 75/90 (83%)
 Frame = -3

Query: 272  RMKEEGCLPDNRYALIIAGDTEKEEVLCGHSEKLAMAYGILNLPYGKTVRVTKNLRVCGD 93
            +MK EG  P  RYALI AGD EKE  LCGHSEKLAMA+GILNLP G+T+RV KNLRVC D
Sbjct: 1130 KMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDD 1189

Query: 92   CHEMAKFMSKMFAKEIVLRDSNRFHHFKDG 3
            CHEMAKFMSK   +EI+LRDSNRFHHFKDG
Sbjct: 1190 CHEMAKFMSKTTRREIILRDSNRFHHFKDG 1219


>ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
            gi|449500809|ref|XP_004161200.1| PREDICTED:
            pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  144 bits (362), Expect = 1e-32
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = -3

Query: 272  RMKEEGCLPDNRYALIIAGDTEKEEVLCGHSEKLAMAYGILNLPYGKTVRVTKNLRVCGD 93
            +MKEEG  P   YAL+ A + EKE  LCGHSEKLAMA+G+LNLP GKT+RVTKNLRVCGD
Sbjct: 829  KMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGD 888

Query: 92   CHEMAKFMSKMFAKEIVLRDSNRFHHFKDG 3
            CHEMAKFMSK  ++EI+LRDS+RFHHFKDG
Sbjct: 889  CHEMAKFMSKSASREIILRDSSRFHHFKDG 918


>ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|222848697|gb|EEE86244.1|
           predicted protein [Populus trichocarpa]
          Length = 571

 Score =  143 bits (361), Expect = 1e-32
 Identities = 67/90 (74%), Positives = 75/90 (83%)
 Frame = -3

Query: 272 RMKEEGCLPDNRYALIIAGDTEKEEVLCGHSEKLAMAYGILNLPYGKTVRVTKNLRVCGD 93
           +MKEEG  P  RYALI A   +KE  LCGHSEKLAMA+GILNLP  +T+RV+KNLRVCGD
Sbjct: 474 KMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGD 533

Query: 92  CHEMAKFMSKMFAKEIVLRDSNRFHHFKDG 3
           CHEMAKF+SK   +EIVLRDSNRFHHFKDG
Sbjct: 534 CHEMAKFISKTLGREIVLRDSNRFHHFKDG 563