BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023653
         (963 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   207   e-103
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   195   4e-96
emb|CBI31781.3| unnamed protein product [Vitis vinifera]              196   1e-89
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...   194   2e-89
gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]        184   6e-85

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  207 bits (528), Expect(2) = e-103
 Identities = 105/154 (68%), Positives = 123/154 (79%), Gaps = 3/154 (1%)
 Frame = +3

Query: 3   LSYAGPTSSVRVEHASRGCFKDSDALAEVLLLYETMGGDSSINAQEHDIDNTV---QDKH 173
           L+YAGP S+VRVE  SR CF D  ALAEV+ LYE +  +S     +H +DNT    Q+ H
Sbjct: 322 LAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLSENSRA---DHQVDNTEVMEQENH 378

Query: 174 LLGVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLE 353
            L +EGIM++P LAVQALAL +RHLKQFG ERI+C+GA+ RPF SNMEMTLSANALQQLE
Sbjct: 379 CLAIEGIMSMPDLAVQALALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLE 438

Query: 354 VLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 455
           VL N+SDGSE+GSLLH MNHTLTIFGSRLL+HWV
Sbjct: 439 VLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWV 472



 Score =  195 bits (496), Expect(2) = e-103
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +1

Query: 460 VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVAHEKSLINDVLCSVLT 636
           V+HPLCD   ISARLDAVSEI  SM +    QN GG+D  D  V + +  +N +L SVLT
Sbjct: 472 VSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLT 531

Query: 637 TLGRSTDIQRGITRIFHRTATTSEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHS 816
           TLGRS DIQRG+TRIFHRTAT SEFI+V  AIL+AGKQLQ+L ++ +D +E+ Q ++V S
Sbjct: 532 TLGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRS 591

Query: 817 ALLRRLILTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPE 963
            LLR+LILTASS  ++ +AAKLLS LNK+AAD+ DL NLFI S GQFPE
Sbjct: 592 VLLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPE 640


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  195 bits (496), Expect(2) = 4e-96
 Identities = 108/169 (63%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = +1

Query: 460 VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVAHEKSLINDVLCSVLT 636
           VTHPLCDR  ISARLDAVSEIAESM +    QN G  D ED  VA  +     +L +VL 
Sbjct: 463 VTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLE 522

Query: 637 TLGRSTDIQRGITRIFHRTATTSEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHS 816
            LGRS DIQRGITRIFHRTAT SEFIAV+ AIL AGKQL++LQ++ E +N+ +Q KTV S
Sbjct: 523 MLGRSPDIQRGITRIFHRTATASEFIAVIQAILIAGKQLRRLQIEEEQNNKRVQAKTVRS 582

Query: 817 ALLRRLILTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPE 963
            LL++LILT SS +VV HAAKLLS LNK+AA+  DL NL + S+GQFPE
Sbjct: 583 VLLKKLILTVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPE 631



 Score =  183 bits (465), Expect(2) = 4e-96
 Identities = 95/151 (62%), Positives = 116/151 (76%)
 Frame = +3

Query: 3   LSYAGPTSSVRVEHASRGCFKDSDALAEVLLLYETMGGDSSINAQEHDIDNTVQDKHLLG 182
           L+YAGP+S+VRVE AS   F D  ALAEV+LLYE MG   + + +   ++ T QD   L 
Sbjct: 313 LAYAGPSSNVRVERASGHHFNDGGALAEVILLYENMGEHKAEDDENQMMERTHQDISYLA 372

Query: 183 VEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVLR 362
           +EGIM +P LAVQALAL + HLKQFGFE+I+ LGA+ RP  SN+EM LSAN LQQLEVLR
Sbjct: 373 IEGIMNMPDLAVQALALTISHLKQFGFEQILRLGASFRPLTSNVEMNLSANTLQQLEVLR 432

Query: 363 NNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 455
           NNS+GS++GSL + MNHTLTI GSRLL+HWV
Sbjct: 433 NNSNGSDSGSLFNIMNHTLTISGSRLLRHWV 463


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score =  196 bits (497), Expect(2) = 1e-89
 Identities = 105/174 (60%), Positives = 123/174 (70%), Gaps = 23/174 (13%)
 Frame = +3

Query: 3   LSYAGPTSSVRVEHASRGCFKDSDALAEVLLLYETMGGDSSINAQEHDIDNTV---QDKH 173
           L+YAGP S+VRVE  SR CF D  ALAEV+ LYE +  +S     +H +DNT    Q+ H
Sbjct: 190 LAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLSENSRA---DHQVDNTEVMEQENH 246

Query: 174 LLGVE--------------------GIMTIPGLAVQALALIMRHLKQFGFERIMCLGATL 293
            L +E                    GIM++P LAVQALAL +RHLKQFG ERI+C+GA+ 
Sbjct: 247 CLAIEPPTTSYVKFVSVHYGSGIALGIMSMPDLAVQALALTIRHLKQFGLERILCMGASF 306

Query: 294 RPFYSNMEMTLSANALQQLEVLRNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 455
           RPF SNMEMTLSANALQQLEVL N+SDGSE+GSLLH MNHTLTIFGSRLL+HWV
Sbjct: 307 RPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWV 360



 Score =  161 bits (408), Expect(2) = 1e-89
 Identities = 91/168 (54%), Positives = 109/168 (64%)
 Frame = +1

Query: 460 VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVAHEKSLINDVLCSVLTT 639
           V+HPLCD   ISARLDAVSEI  SM                             C     
Sbjct: 360 VSHPLCDSNMISARLDAVSEIVMSMGS---------------------------CKASQN 392

Query: 640 LGRSTDIQRGITRIFHRTATTSEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHSA 819
            GRS DIQRG+TRIFHRTAT SEFI+V  AIL+AGKQLQ+L ++ +D +E+ Q ++V S 
Sbjct: 393 FGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSV 452

Query: 820 LLRRLILTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPE 963
           LLR+LILTASS  ++ +AAKLLS LNK+AAD+ DL NLFI S GQFPE
Sbjct: 453 LLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPE 500


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
           predicted protein [Populus trichocarpa]
          Length = 1092

 Score =  194 bits (492), Expect(2) = 2e-89
 Identities = 96/151 (63%), Positives = 119/151 (78%)
 Frame = +3

Query: 3   LSYAGPTSSVRVEHASRGCFKDSDALAEVLLLYETMGGDSSINAQEHDIDNTVQDKHLLG 182
           L+Y+GP+S+VRVE  SR CF D  ALA+V+ LYE M  D+  + ++   D   Q    L 
Sbjct: 297 LAYSGPSSNVRVERVSRDCFSDGGALADVMSLYENMIEDNLGDNEKQMTDAKEQGSCHLA 356

Query: 183 VEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVLR 362
           +EG++ +P LAV+ALAL +RHLKQFGF+R++CLGA+ RPF SNMEM LSAN LQQLEVLR
Sbjct: 357 IEGVIKMPDLAVEALALTVRHLKQFGFDRMLCLGASFRPFSSNMEMNLSANTLQQLEVLR 416

Query: 363 NNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 455
           NNSDGSE+GSLLH MNHTLTI+GSRLL+HWV
Sbjct: 417 NNSDGSESGSLLHIMNHTLTIYGSRLLRHWV 447



 Score =  162 bits (410), Expect(2) = 2e-89
 Identities = 104/196 (53%), Positives = 122/196 (62%), Gaps = 28/196 (14%)
 Frame = +1

Query: 460  VTHPLCDRTSISARLDAVSEIAESMTPST-KQNGGGVDNEDECVAHEKSLINDVLCSVLT 636
            VTHPLCDR  ISARLDAVSEIAE M  S   Q    +D +D  VA  +  +  +L +VLT
Sbjct: 447  VTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDEDDSEVAIVQPDLYYLLSAVLT 506

Query: 637  TLGRSTDIQRGITRIFHRTATTSEF---------------------------IAVVCAIL 735
             LGRS DI+RGITRIFHRTAT SEF                           IAV  AIL
Sbjct: 507  ALGRSPDIERGITRIFHRTATASEFLLMFLIMYLTYLSSFSSPIAVLVWLWFIAVFQAIL 566

Query: 736  YAGKQLQQLQVDHEDSNEELQEKTVHSALLRRLILTASSPTVVNHAAKLLSLLNKDAADQ 915
             AGKQL++L +  E + + +  KTV S LL+RLIL ASS +VV +AAKLLS LNK+AA+Q
Sbjct: 567  AAGKQLKRLCIQEEHNYDGVGSKTVKSVLLKRLILAASSSSVVGNAAKLLSTLNKEAAEQ 626

Query: 916  KDLQNLFITSDGQFPE 963
             DL NL I SD QFPE
Sbjct: 627  GDLTNLIIISDDQFPE 642


>gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]
          Length = 846

 Score =  184 bits (467), Expect(2) = 6e-85
 Identities = 92/152 (60%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
 Frame = +3

Query: 3   LSYAGPTSSVRVEHASRGCFKDSDALAEVLLLYETMGGDSSINAQEHD-IDNTVQDKHLL 179
           L+YAGP S+VRVE  S   F D  AL+EV+ LYE +  +  +N  E +  +  + +++  
Sbjct: 57  LAYAGPASNVRVEDVSSDRFSDGGALSEVMSLYEGVRENYLLNVHEREEAEVKMHEQNQS 116

Query: 180 GVEGIMTIPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVL 359
            ++GI+ +P LAVQALALI+RHLKQFG ER++CLGA+ RPF SNMEMTLSANALQQLEVL
Sbjct: 117 AIQGILAMPDLAVQALALIIRHLKQFGMERVLCLGASFRPFSSNMEMTLSANALQQLEVL 176

Query: 360 RNNSDGSETGSLLHAMNHTLTIFGSRLLKHWV 455
           +NN DGSE+GSL+H MN TLT+FGSRLL+HWV
Sbjct: 177 KNNFDGSESGSLMHCMNQTLTVFGSRLLRHWV 208



 Score =  157 bits (397), Expect(2) = 6e-85
 Identities = 93/168 (55%), Positives = 120/168 (71%)
 Frame = +1

Query: 460 VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVAHEKSLINDVLCSVLTT 639
           VTHPL DR  I ARLDAV+EIA+SM  + + +   V+  D  ++  +  I+ ++ S L++
Sbjct: 208 VTHPLRDRNMIDARLDAVAEIADSMK-TCQTSDLKVEGADVTISQPE--IHHLISSALSS 264

Query: 640 LGRSTDIQRGITRIFHRTATTSEFIAVVCAILYAGKQLQQLQVDHEDSNEELQEKTVHSA 819
           LGRS DIQRGITRIFHR AT SE   V+ AIL A KQL QL ++ ED +  LQ +T+ S 
Sbjct: 265 LGRSPDIQRGITRIFHRNATASE---VIQAILIAAKQLHQLSLE-EDKSVNLQRQTLRSV 320

Query: 820 LLRRLILTASSPTVVNHAAKLLSLLNKDAADQKDLQNLFITSDGQFPE 963
           LLR+LI  ASS TV+N AAKLLS LNK+AAD +DL NLF+ SDG+FP+
Sbjct: 321 LLRKLISIASSSTVINAAAKLLSALNKEAADSRDLHNLFMISDGKFPQ 368