BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023650
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   128   6e-28
emb|CBI17585.3| unnamed protein product [Vitis vinifera]              127   7e-28
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...   119   3e-25
ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arab...   112   3e-23

>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  128 bits (321), Expect = 6e-28
 Identities = 62/126 (49%), Positives = 79/126 (62%)
 Frame = -1

Query: 380 GVLEGLEGLWRELMPDKRIASIXXXXXXXXXXXXENXXXXXXXXXXXXXXRLKPWLDPGA 201
           G +   +   R ++PD+RI ++            EN               LKPWLDP A
Sbjct: 289 GFVHETDEFLRGMLPDERIKNVGFCVDSSDDDDDENNHSSDDAGVDGVQ--LKPWLDPRA 346

Query: 200 LANALSDWDPSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDGF 21
           LANAL++WDP++VLALE A F+WTTRLVCK+LR F   ETAWKFFCWVAYQPG F H+ +
Sbjct: 347 LANALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQPGGFNHNIY 406

Query: 20  TISRMI 3
           T+ RM+
Sbjct: 407 TVQRMM 412


>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  127 bits (320), Expect = 7e-28
 Identities = 54/75 (72%), Positives = 64/75 (85%)
 Frame = -1

Query: 227 LKPWLDPGALANALSDWDPSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQ 48
           LKPWLDP ALANAL++WDP++VLALE A F+WTTRLVCK+LR F   ETAWKFFCWVAYQ
Sbjct: 314 LKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQ 373

Query: 47  PGEFTHDGFTISRMI 3
           PG F H+ +T+ RM+
Sbjct: 374 PGGFNHNIYTVQRMM 388


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score =  119 bits (298), Expect = 3e-25
 Identities = 64/127 (50%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
 Frame = -1

Query: 380 GVLEGLEGLWRELMPDKRIASIXXXXXXXXXXXXE-NXXXXXXXXXXXXXXRLKPWLDPG 204
           G +E  +   +E+ PD+RI SI            +                RLKPWLDP 
Sbjct: 290 GFVEETKEFVKEMFPDERIKSIGSCSDGSDDDEDDYENVNNGDVHTDTSEVRLKPWLDPK 349

Query: 203 ALANALSDWDPSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDG 24
           ALANALS W P  V  LE+A FVWTTRLVCK+LR F   ETAW FFCWVAYQPG FTHD 
Sbjct: 350 ALANALSQWSPEVVSMLEDAKFVWTTRLVCKVLRNFSSPETAWYFFCWVAYQPG-FTHDV 408

Query: 23  FTISRMI 3
           +T+ RM+
Sbjct: 409 YTVQRMM 415


>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score =  117 bits (293), Expect = 1e-24
 Identities = 62/130 (47%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
 Frame = -1

Query: 380 GVLEGLEGLWRELMPDKRIASIXXXXXXXXXXXXENXXXXXXXXXXXXXXR-----LKPW 216
           G+LEG E L R ++PD+ I S+            EN                    LKPW
Sbjct: 296 GILEGKEQLLRGILPDETIRSVSYSIDSGDEDENENEDQDENISDAGQCNHVDGIHLKPW 355

Query: 215 LDPGALANALSDWDPSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEF 36
           +DP AL +AL +W P +V ALE+ANFVWTTRLVCKMLR FK  E AW FFCW A Q G F
Sbjct: 356 MDPRALVSALRNWSPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWAANQRG-F 414

Query: 35  THDGFTISRM 6
           THD +T+ R+
Sbjct: 415 THDIYTVQRI 424


>ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp.
           lyrata] gi|297312584|gb|EFH43008.1| hypothetical protein
           ARALYDRAFT_920064 [Arabidopsis lyrata subsp. lyrata]
          Length = 661

 Score =  112 bits (280), Expect = 3e-23
 Identities = 61/126 (48%), Positives = 69/126 (54%)
 Frame = -1

Query: 380 GVLEGLEGLWRELMPDKRIASIXXXXXXXXXXXXENXXXXXXXXXXXXXXRLKPWLDPGA 201
           G  +  E   RE++PD+RI  I            E                LKPWLDP A
Sbjct: 295 GFEQETEEFLREMLPDERIKDISIYSMDNPSDSEEEGDEHNDNVNEGQVK-LKPWLDPKA 353

Query: 200 LANALSDWDPSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDGF 21
           LA +L  W    V ALE ANFVWT  LVCKMLR F+  ETAW FFCWVA QPG FTHD +
Sbjct: 354 LATSLKKWSSDAVTALEEANFVWTNLLVCKMLRNFRSPETAWSFFCWVAIQPG-FTHDAY 412

Query: 20  TISRMI 3
           TI RM+
Sbjct: 413 TIERMM 418