BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023592
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   288   7e-76
emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]   284   1e-74
ref|XP_002309257.1| predicted protein [Populus trichocarpa] gi|2...   281   5e-74
ref|XP_002322776.1| predicted protein [Populus trichocarpa] gi|2...   280   2e-73
emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana s...   274   1e-71

>ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
           vinifera]
          Length = 311

 Score =  288 bits (736), Expect = 7e-76
 Identities = 147/206 (71%), Positives = 165/206 (80%)
 Frame = +2

Query: 2   LYVGNLPYAMTSSELTDIFTEAGRVTSVEIVYDRVTDRSRGFGFVTMQTVDEAKEAIRMF 181
           LYVGNLPY+MTSS+L D+F EAG V SVEIVYDRVTDRSRGF FVTM +V EAKEAIRMF
Sbjct: 105 LYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMF 164

Query: 182 NGALVGGRSVKVNFPEVPRGGEREVMWPKIRCSYRGFVESPYKIYAGNLSWRLTSEGLRD 361
           +G+ VGGR+VKVNFPEVPRGGER VM PKIR SYRGFV+SPYKIYAGNLSWRLTSEGLRD
Sbjct: 165 DGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRD 224

Query: 362 AFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDTMNGVEVEG*PLRLNLVGE 541
           AF   PGLL A+VIYER+SGRSRGFGF++FA+  +A+SAL+ MN VEVEG PLRLNL   
Sbjct: 225 AFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLNLAAV 284

Query: 542 NADPHSQETKAEAETDDNATAMQSAS 619
            A P            DN+  + S S
Sbjct: 285 RAPPAPSPGPGLERNVDNSELISSIS 310



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 25/74 (33%), Positives = 48/74 (64%)
 Frame = +2

Query: 308 KIYAGNLSWRLTSEGLRDAFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDT 487
           ++Y GNL + +TS  L D F+    ++S  ++Y+R + RSRGF F+T  ++++A+ A+  
Sbjct: 104 RLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 163

Query: 488 MNGVEVEG*PLRLN 529
            +G +V G  +++N
Sbjct: 164 FDGSQVGGRTVKVN 177


>emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
          Length = 454

 Score =  284 bits (726), Expect = 1e-74
 Identities = 145/206 (70%), Positives = 164/206 (79%)
 Frame = +2

Query: 2   LYVGNLPYAMTSSELTDIFTEAGRVTSVEIVYDRVTDRSRGFGFVTMQTVDEAKEAIRMF 181
           LYVGNLPY+MTSS+L  +F EAG V SVEIVYDRVTDRSRGF FVTM +V EAKEAIRMF
Sbjct: 248 LYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMF 307

Query: 182 NGALVGGRSVKVNFPEVPRGGEREVMWPKIRCSYRGFVESPYKIYAGNLSWRLTSEGLRD 361
           +G+ VGGR+VKVNFPEVPRGGER VM PKIR SYRGFV+SPYKIYAGNLSWRLTSEGLRD
Sbjct: 308 DGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRD 367

Query: 362 AFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDTMNGVEVEG*PLRLNLVGE 541
           AF   PGLL A+VIYER+SGRSRGFGF++FA+  +A+SAL+ M+ VEVEG PLRLNL   
Sbjct: 368 AFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLRLNLAAV 427

Query: 542 NADPHSQETKAEAETDDNATAMQSAS 619
            A P            DN+  + S S
Sbjct: 428 RAPPAPSPGPGLERNVDNSELISSIS 453



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 24/74 (32%), Positives = 47/74 (63%)
 Frame = +2

Query: 308 KIYAGNLSWRLTSEGLRDAFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDT 487
           ++Y GNL + +TS  L   F+    ++S  ++Y+R + RSRGF F+T  ++++A+ A+  
Sbjct: 247 RLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRM 306

Query: 488 MNGVEVEG*PLRLN 529
            +G +V G  +++N
Sbjct: 307 FDGSQVGGRTVKVN 320


>ref|XP_002309257.1| predicted protein [Populus trichocarpa] gi|222855233|gb|EEE92780.1|
           predicted protein [Populus trichocarpa]
          Length = 321

 Score =  281 bits (720), Expect = 5e-74
 Identities = 137/198 (69%), Positives = 167/198 (84%)
 Frame = +2

Query: 2   LYVGNLPYAMTSSELTDIFTEAGRVTSVEIVYDRVTDRSRGFGFVTMQTVDEAKEAIRMF 181
           LYVGNLPY+MTSSELT++F EAGRV S E++YDRVTDRSRGFGFVTM +V+EAK+AI+MF
Sbjct: 115 LYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQMF 174

Query: 182 NGALVGGRSVKVNFPEVPRGGEREVMWPKIRCSYRGFVESPYKIYAGNLSWRLTSEGLRD 361
           NG   GGRSV+VNFPEVPRGGEREVM P+I+  Y+GF++S +KIYAGNL WRLTSEGLRD
Sbjct: 175 NGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYKGFIDSEHKIYAGNLGWRLTSEGLRD 234

Query: 362 AFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDTMNGVEVEG*PLRLNLVGE 541
           AF  QPG+LSA+VIYERDS RSRGFGF++F +  +A++AL+ MNG EVEG P+RLNL GE
Sbjct: 235 AFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRPMRLNLAGE 294

Query: 542 NADPHSQETKAEAETDDN 595
            + P S +   E  T++N
Sbjct: 295 RSPPPSAK---ENNTENN 309



 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%)
 Frame = +2

Query: 308 KIYAGNLSWRLTSEGLRDAFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDT 487
           K+Y GNL + +TS  L + F+    + SA VIY+R + RSRGFGF+T  ++ +A+ A+  
Sbjct: 114 KLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQM 173

Query: 488 MNGVEVEG*PLRLN 529
            NG +  G  +R+N
Sbjct: 174 FNGTQFGGRSVRVN 187


>ref|XP_002322776.1| predicted protein [Populus trichocarpa] gi|222867406|gb|EEF04537.1|
           predicted protein [Populus trichocarpa]
          Length = 324

 Score =  280 bits (715), Expect = 2e-73
 Identities = 137/206 (66%), Positives = 169/206 (82%)
 Frame = +2

Query: 2   LYVGNLPYAMTSSELTDIFTEAGRVTSVEIVYDRVTDRSRGFGFVTMQTVDEAKEAIRMF 181
           LYVGNLPY+MTSSEL ++F EAGRV   E++ DRVTDRSRGFGFVTM++V+EAKEAIRMF
Sbjct: 118 LYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMF 177

Query: 182 NGALVGGRSVKVNFPEVPRGGEREVMWPKIRCSYRGFVESPYKIYAGNLSWRLTSEGLRD 361
           NG+ VGGR+++VNFPEVPRGGEREVM P+IR  Y+GF++S +KIYAGNL WRLTSEGL D
Sbjct: 178 NGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGD 237

Query: 362 AFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDTMNGVEVEG*PLRLNLVGE 541
           AF  QPGLLSA+VIYERD+GRSRGFGF++F +  +A++AL+ MNG EV+G PLRLNL GE
Sbjct: 238 AFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRLNLAGE 297

Query: 542 NADPHSQETKAEAETDDNATAMQSAS 619
            + P   +   E  T+DN  + +  S
Sbjct: 298 RSYPPPAK---ENNTEDNLESSELLS 320



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/74 (40%), Positives = 46/74 (62%)
 Frame = +2

Query: 308 KIYAGNLSWRLTSEGLRDAFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDT 487
           K+Y GNL + +TS  L + F+    +  A VI +R + RSRGFGF+T  ++ +A+ A+  
Sbjct: 117 KLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRM 176

Query: 488 MNGVEVEG*PLRLN 529
            NG +V G  LR+N
Sbjct: 177 FNGSQVGGRTLRVN 190


>emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
          Length = 319

 Score =  274 bits (700), Expect = 1e-71
 Identities = 136/201 (67%), Positives = 167/201 (83%), Gaps = 3/201 (1%)
 Frame = +2

Query: 2   LYVGNLPYAMTSSELTDIFTEAGRVTSVEIVYDRVTDRSRGFGFVTMQTVDEAKEAIRMF 181
           LYVGNLP++MTSS+L++IF EAG V +VEIVYDRVTDRSRGF FVTM +V+EAKEAIR+F
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 170

Query: 182 NGALVGGRSVKVNFPEVPRGGEREVMWPKIRCSYRGFVESPYKIYAGNLSWRLTSEGLRD 361
           +G+ VGGR+VKVNFPEVPRGGEREVM  KIR +Y+GFV+SP+K+Y  NLSW LTS+GLRD
Sbjct: 171 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRD 230

Query: 362 AFDGQPGLLSARVIYERDSGRSRGFGFITFATMRDAQSALDTMNGVEVEG*PLRLNLVGE 541
           AF  QPG +SA+VIY+R SGRSRGFGFITF++    +SALDTMN VE+EG PLRLN+ G+
Sbjct: 231 AFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRLNVAGQ 290

Query: 542 NA---DPHSQETKAEAETDDN 595
            A    P   ET  E ++++N
Sbjct: 291 KAPLSSPSVVETSPENDSENN 311