BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023517
         (994 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]   316   6e-84
emb|CBI22376.3| unnamed protein product [Vitis vinifera]              313   3e-83
ref|XP_002521979.1| pentatricopeptide repeat-containing protein,...   287   3e-75
ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containi...   286   4e-75
ref|XP_002892464.1| pentatricopeptide repeat-containing protein ...   284   3e-74

>emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  316 bits (809), Expect = 6e-84
 Identities = 156/254 (61%), Positives = 190/254 (74%), Gaps = 18/254 (7%)
 Frame = +1

Query: 286 RRSAFVLRCSGQQRSVCIDKVNRSRRDIWR------GVQK------------NPLWLSFD 411
           RR+A +LRC GQ+RSVCID+VN   ++ W       GV+K            N    SFD
Sbjct: 64  RRNALLLRCIGQERSVCIDRVNGEDQE-WSSGRYAFGVEKKLREQMSSKKYSNSSNSSFD 122

Query: 412 GPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRID 591
           G FV ND ++NN+IL++ C+ GK++ AS LI+ MAR++QIP+FP+CIN+IRGLI +   +
Sbjct: 123 GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLESTE 182

Query: 592 KASDVLRVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTIL 771
           +A+ VL++MVMSGG+PDIITYNMLVG LCKK  LKTAI+LL++MSLSGCPPD ITYNTIL
Sbjct: 183 RATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTIL 242

Query: 772 RSMFDHGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCY 951
           R MFDHG +DQAI FWKDQLRKGCPAYLITYTVL+ELVC+HCG              GCY
Sbjct: 243 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 302

Query: 952 PDIVTYNSLVNSTC 993
           PDIVTYNSLVN TC
Sbjct: 303 PDIVTYNSLVNYTC 316



 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           DA + N IL    ++G   +A        RK    +      +I  +       +A +VL
Sbjct: 234 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 293

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKK-RYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFD 786
             M + G  PDI+TYN LV   CK+ +Y  TA+ ++ ++   G  P+ +TYNT+L S+  
Sbjct: 294 EDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTAL-IIYNLLSHGMGPNTVTYNTLLHSLCT 352

Query: 787 HGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVT 966
           HG++D+             P  ++TY +L+  +C++                 C PDI+T
Sbjct: 353 HGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIIT 412

Query: 967 YNSLVNSTC 993
           YN+L+ + C
Sbjct: 413 YNTLLAALC 421



 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 46/183 (25%), Positives = 82/183 (44%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           D  + N ++   C  GK  + + +I  +      P+      ++  L      D+  ++L
Sbjct: 304 DIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEIL 363

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDH 789
            +M M+   P ++TYN+L+  LCK   L  AI+  + M    C PD+ITYNT+L ++   
Sbjct: 364 LIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKE 423

Query: 790 GHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTY 969
           G  D+A+          C   LITY ++++ + +                 G  PD +T+
Sbjct: 424 GMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMIERGFAPDDITH 483

Query: 970 NSL 978
            +L
Sbjct: 484 RTL 486



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 39/178 (21%), Positives = 83/178 (46%)
 Frame = +1

Query: 451 ILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMSG 630
           ++E  C +   ++A  ++  MA +   P      +++       + +  + ++  ++  G
Sbjct: 276 LIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHG 335

Query: 631 GVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQAI 810
             P+ +TYN L+  LC   Y     ++L  M+++  PP V+TYN ++  +  +G  D+AI
Sbjct: 336 MGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAI 395

Query: 811 SFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLVN 984
           +F+   +   C   +ITY  L+  +C+                  C P ++TYN +++
Sbjct: 396 NFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVID 453


>emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  313 bits (803), Expect = 3e-83
 Identities = 155/254 (61%), Positives = 189/254 (74%), Gaps = 18/254 (7%)
 Frame = +1

Query: 286 RRSAFVLRCSGQQRSVCIDKVNRSRRDIWR------GVQK------------NPLWLSFD 411
           RR+A +LRC GQ+RSVCID+VN   ++ W       GV+K            N    S D
Sbjct: 64  RRNALLLRCIGQERSVCIDRVNGEDQE-WSSGRYAFGVEKKLREQMSSKKYSNSSNSSLD 122

Query: 412 GPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRID 591
           G FV ND ++NN+IL++ C+ GK++ AS LI+ MAR++QIP+FP+CIN+IRGLI +   +
Sbjct: 123 GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLESTE 182

Query: 592 KASDVLRVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTIL 771
           +A+ VL++MVMSGG+PDIITYNMLVG LCKK  LKTAI+LL++MSLSGCPPD ITYNTIL
Sbjct: 183 RATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTIL 242

Query: 772 RSMFDHGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCY 951
           R MFDHG +DQAI FWKDQLRKGCPAYLITYTVL+ELVC+HCG              GCY
Sbjct: 243 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 302

Query: 952 PDIVTYNSLVNSTC 993
           PDIVTYNSLVN TC
Sbjct: 303 PDIVTYNSLVNYTC 316



 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           DA + N IL    ++G   +A        RK    +      +I  +       +A +VL
Sbjct: 234 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 293

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKK-RYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFD 786
             M + G  PDI+TYN LV   CK+ +Y  TA+ ++ ++   G  P+ +TYNT+L S+  
Sbjct: 294 EDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTAL-IIYNLLSHGMGPNTVTYNTLLHSLCT 352

Query: 787 HGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVT 966
           HG++D+             P  ++TY +L+  +C++                 C PDI+T
Sbjct: 353 HGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIIT 412

Query: 967 YNSLVNSTC 993
           YN+L+ + C
Sbjct: 413 YNTLLAALC 421



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 45/183 (24%), Positives = 81/183 (44%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           D  + N ++   C  GK  + + +I  +      P+      ++  L      D+  ++L
Sbjct: 304 DIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEIL 363

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDH 789
            +M  +   P ++TYN+L+  LCK   L  AI+  + M    C PD+ITYNT+L ++   
Sbjct: 364 LIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKE 423

Query: 790 GHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTY 969
           G  D+A+          C   LITY ++++ + +                 G  PD +T+
Sbjct: 424 GMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITH 483

Query: 970 NSL 978
            +L
Sbjct: 484 RTL 486



 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 39/178 (21%), Positives = 82/178 (46%)
 Frame = +1

Query: 451 ILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMSG 630
           ++E  C +   ++A  ++  MA +   P      +++       + +  + ++  ++  G
Sbjct: 276 LIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHG 335

Query: 631 GVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQAI 810
             P+ +TYN L+  LC   Y     ++L  M+ +  PP V+TYN ++  +  +G  D+AI
Sbjct: 336 MGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAI 395

Query: 811 SFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLVN 984
           +F+   +   C   +ITY  L+  +C+                  C P ++TYN +++
Sbjct: 396 NFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVID 453


>ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538783|gb|EEF40383.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 496

 Score =  287 bits (734), Expect = 3e-75
 Identities = 137/252 (54%), Positives = 181/252 (71%), Gaps = 17/252 (6%)
 Frame = +1

Query: 289 RSAFVLRCSGQQRSVCIDKVNRSRRDIWRGVQ---------------KNPLWLS--FDGP 417
           R+ F L+C G Q+SV IDKV+++  D W                   KN +      +GP
Sbjct: 33  RTLFPLQCKGLQKSVSIDKVDKNDHDDWSSETLVLDVGRKFREQMNTKNHVSPKSYIEGP 92

Query: 418 FVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKA 597
           FV+N+ + NN+IL+  CN G++M+A  LI+ MAR+SQIP+F  C N+IRG I +++I+KA
Sbjct: 93  FVENEEEINNEILQHLCNKGRLMDAPRLIDVMARRSQIPNFSCCTNLIRGFIKVDQINKA 152

Query: 598 SDVLRVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRS 777
           + +L++MVMSGGVPD+ITYNM+VG LCK+  LK+AIDLLEDMSLSGCPPDV+TYNTI+R 
Sbjct: 153 ARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRC 212

Query: 778 MFDHGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPD 957
           MF + ++DQA+ FWK+QLR+GCP YLITYT+L+ELVC+HCG              GCYPD
Sbjct: 213 MFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDMAIEGCYPD 272

Query: 958 IVTYNSLVNSTC 993
           +VTYNSLVN TC
Sbjct: 273 LVTYNSLVNFTC 284



 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           D  + N ++   C  GK  +A+ +I  M      P+      ++  L +    D+  ++L
Sbjct: 272 DLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDEVDEIL 331

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRS---- 777
            VM  +   P ++TYN L+  LCK   +  AID    M    C PD++TYNT+L +    
Sbjct: 332 TVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCKE 391

Query: 778 ---MFDHGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGC 948
              M     ++ A+   ++  ++        Y  +++ +C +                 C
Sbjct: 392 ECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIMISSRC 451

Query: 949 YPDIVTYNSLVNS 987
            PD   Y++L+NS
Sbjct: 452 KPDEEIYSALINS 464



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 35/147 (23%), Positives = 70/147 (47%)
 Frame = +1

Query: 451 ILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMSG 630
           ++E  C +   + A  ++  MA +   P      +++       + + A+ ++  M+  G
Sbjct: 244 LIELVCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHG 303

Query: 631 GVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQAI 810
             P+ ITYN L+  LC         ++L  M  +  PP V+TYNT++  +   G  ++AI
Sbjct: 304 MEPNAITYNTLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAI 363

Query: 811 SFWKDQLRKGCPAYLITYTVLVELVCR 891
            F+   + + C   ++TY  L+  +C+
Sbjct: 364 DFFHQMVYENCLPDIVTYNTLLGALCK 390



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
 Frame = +1

Query: 421 VDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKAS 600
           ++ +A + N +L S C+ G   E   ++  M   S  P       +I GL     +++A 
Sbjct: 304 MEPNAITYNTLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAI 363

Query: 601 DVLRVMVMSGGVPDIITYNMLVGVLCKKR-------YLKTAIDLLEDMSLSGCPPDVITY 759
           D    MV    +PDI+TYN L+G LCK+          + A+++L +M       +   Y
Sbjct: 364 DFFHQMVYENCLPDIVTYNTLLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAY 423

Query: 760 NTILRSMFDHGHYDQAISFWKDQLRKGCPAYLITYTVLV 876
            +++  + ++   D AI   +  +   C      Y+ L+
Sbjct: 424 RSVIDGLCNNKKTDIAIQVLEIMISSRCKPDEEIYSALI 462


>ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  286 bits (733), Expect = 4e-75
 Identities = 132/194 (68%), Positives = 159/194 (81%)
 Frame = +1

Query: 412 GPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRID 591
           G FV ND ++NN+IL++ C+ GK++ AS LI+ MAR++QIP+FP+CIN+IRGLI +   +
Sbjct: 32  GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLESTE 91

Query: 592 KASDVLRVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTIL 771
           +A+ VL++MVMSGG+PDIITYNMLVG LCKK  LKTAI+LL++MSLSGCPPD ITYNTIL
Sbjct: 92  RATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTIL 151

Query: 772 RSMFDHGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCY 951
           R MFDHG +DQAI FWKDQLRKGCPAYLITYTVL+ELVC+HCG              GCY
Sbjct: 152 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 211

Query: 952 PDIVTYNSLVNSTC 993
           PDIVTYNSLVN TC
Sbjct: 212 PDIVTYNSLVNYTC 225



 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           DA + N IL    ++G   +A        RK    +      +I  +       +A +VL
Sbjct: 143 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 202

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKK-RYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFD 786
             M + G  PDI+TYN LV   CK+ +Y  TA+ ++ ++   G  P+ +TYNT+L S+  
Sbjct: 203 EDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTAL-IIYNLLSHGMGPNTVTYNTLLHSLCT 261

Query: 787 HGHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVT 966
           HG++D+             P  ++TY +L+  +C++                 C PDI+T
Sbjct: 262 HGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIIT 321

Query: 967 YNSLVNSTC 993
           YN+L+ + C
Sbjct: 322 YNTLLAALC 330



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 45/183 (24%), Positives = 81/183 (44%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           D  + N ++   C  GK  + + +I  +      P+      ++  L      D+  ++L
Sbjct: 213 DIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEIL 272

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDH 789
            +M  +   P ++TYN+L+  LCK   L  AI+  + M    C PD+ITYNT+L ++   
Sbjct: 273 LIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKE 332

Query: 790 GHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTY 969
           G  D+A+          C   LITY ++++ + +                 G  PD +T+
Sbjct: 333 GMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITH 392

Query: 970 NSL 978
            +L
Sbjct: 393 RTL 395



 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 39/178 (21%), Positives = 82/178 (46%)
 Frame = +1

Query: 451 ILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMSG 630
           ++E  C +   ++A  ++  MA +   P      +++       + +  + ++  ++  G
Sbjct: 185 LIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHG 244

Query: 631 GVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQAI 810
             P+ +TYN L+  LC   Y     ++L  M+ +  PP V+TYN ++  +  +G  D+AI
Sbjct: 245 MGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAI 304

Query: 811 SFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLVN 984
           +F+   +   C   +ITY  L+  +C+                  C P ++TYN +++
Sbjct: 305 NFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVID 362


>ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338306|gb|EFH68723.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 555

 Score =  284 bits (726), Expect = 3e-74
 Identities = 138/242 (57%), Positives = 171/242 (70%), Gaps = 12/242 (4%)
 Frame = +1

Query: 304 LRCSGQQRSVCIDKV-------NRSRRDIWRGVQKN-----PLWLSFDGPFVDNDADSNN 447
           LRC G   SVCID V        RS      GV  N      L LS DGP  +ND ++NN
Sbjct: 45  LRCHGLMTSVCIDNVADVDDHAERSSEFHHYGVGNNLRARKQLGLSSDGPITENDEETNN 104

Query: 448 DILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMS 627
           +IL + C+NGK+ +A  L+  MAR +Q+PHFP+C N++RGL  ++++DKA  +LR+MVMS
Sbjct: 105 EILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVILRIMVMS 164

Query: 628 GGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQA 807
           GGVPD ITYNM++G LCKK ++++A+ LLEDMSLSG PPDVITYNT++R MFDHG+ +QA
Sbjct: 165 GGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMFDHGNAEQA 224

Query: 808 ISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLVNS 987
           I FWKDQLR GCP Y+ITYTVLVELVCR+CG              GCYPDIVTYNSLVN 
Sbjct: 225 IRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIVTYNSLVNY 284

Query: 988 TC 993
            C
Sbjct: 285 NC 286



 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 51/188 (27%), Positives = 80/188 (42%)
 Frame = +1

Query: 430 DADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVL 609
           D  + N ++   C  G + E + +I  +       +      ++  L +    D+  ++L
Sbjct: 274 DIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEIL 333

Query: 610 RVMVMSGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDH 789
            +M  +   P +ITYN+L+  LCK R L  AID    M    C PD++TYNT+L +M   
Sbjct: 334 NIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKE 393

Query: 790 GHYDQAISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTY 969
           G  D AI          C   LITY  +++ + R                 G  PD +T 
Sbjct: 394 GMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITR 453

Query: 970 NSLVNSTC 993
            SL+   C
Sbjct: 454 RSLIYGFC 461



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 44/149 (29%), Positives = 71/149 (47%)
 Frame = +1

Query: 445 NDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVM 624
           N +L S C+N    E   ++N M + S  P       +I GL     + +A D    M+ 
Sbjct: 314 NTLLHSLCSNEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLE 373

Query: 625 SGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQ 804
              +PDI+TYN L+G + K+  +  AI+LL  +  + C P +ITYN+++  +   G   +
Sbjct: 374 QKCLPDIVTYNTLLGAMSKEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKK 433

Query: 805 AISFWKDQLRKGCPAYLITYTVLVELVCR 891
           A+  +   L  G     IT   L+   CR
Sbjct: 434 ALELYHHMLDAGISPDDITRRSLIYGFCR 462



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 35/126 (27%), Positives = 61/126 (48%)
 Frame = +1

Query: 445 NDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVM 624
           N +++     G + +A  L + M      P      ++I G    N +++AS VL+    
Sbjct: 419 NSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLIYGFCRANLVEEASQVLKETSN 478

Query: 625 SGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQ 804
            G      TY +++  LCKKR ++ AI+++E M  SGC PD   Y  I++ + + G   +
Sbjct: 479 RGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGCKPDETIYTAIVKGVEEMGMGSE 538

Query: 805 AISFWK 822
           A+   K
Sbjct: 539 AVQLQK 544



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 37/178 (20%), Positives = 76/178 (42%)
 Frame = +1

Query: 451 ILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVMSG 630
           ++E  C       A +++  MA +   P      +++        +++ + V++ ++  G
Sbjct: 246 LVELVCRYCGSARAMDVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVALVIQHILSHG 305

Query: 631 GVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQAI 810
              + +TYN L+  LC   Y     ++L  M  +   P VITYN ++  +       +AI
Sbjct: 306 LELNTVTYNTLLHSLCSNEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAI 365

Query: 811 SFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLVN 984
            F+   L + C   ++TY  L+  + +                  C P ++TYNS+++
Sbjct: 366 DFFYQMLEQKCLPDIVTYNTLLGAMSKEGMVDDAIELLGLLKSTSCLPGLITYNSVID 423



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 36/179 (20%), Positives = 75/179 (41%)
 Frame = +1

Query: 445 NDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINMNRIDKASDVLRVMVM 624
           N ++   C    +  A +    M  +  +P       ++  +     +D A ++L ++  
Sbjct: 349 NILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKEGMVDDAIELLGLLKS 408

Query: 625 SGGVPDIITYNMLVGVLCKKRYLKTAIDLLEDMSLSGCPPDVITYNTILRSMFDHGHYDQ 804
           +  +P +ITYN ++  L +K  +K A++L   M  +G  PD IT  +++         ++
Sbjct: 409 TSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLIYGFCRANLVEE 468

Query: 805 AISFWKDQLRKGCPAYLITYTVLVELVCRHCGXXXXXXXXXXXXXXGCYPDIVTYNSLV 981
           A    K+   +G      TY ++++ +C+                 GC PD   Y ++V
Sbjct: 469 ASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGCKPDETIYTAIV 527