BLASTX nr result

ID: Coptis23_contig00023492 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023492
         (1114 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274947.2| PREDICTED: uncharacterized protein LOC100253...   122   2e-25
emb|CAN82174.1| hypothetical protein VITISV_015082 [Vitis vinifera]   122   2e-25
ref|XP_002523203.1| protein phosphatases pp1 regulatory subunit,...   111   4e-22
ref|XP_003547568.1| PREDICTED: uncharacterized protein LOC100807...    70   1e-09
ref|NP_181015.7| Outer arm dynein light chain 1 protein [Arabido...    68   5e-09

>ref|XP_002274947.2| PREDICTED: uncharacterized protein LOC100253161 [Vitis vinifera]
            gi|297740810|emb|CBI30992.3| unnamed protein product
            [Vitis vinifera]
          Length = 1717

 Score =  122 bits (305), Expect = 2e-25
 Identities = 81/210 (38%), Positives = 107/210 (50%), Gaps = 1/210 (0%)
 Frame = +2

Query: 488  SKTSLSSNTDPVKRRSSTGGIVGKQSVS-DKKFDNAASVVGKKTTTLDSDSVKRSSVEPR 664
            S ++ SSN+ P+ RR+STGG+  K SVS  K+  N +SV  KKTTTL SD ++RS  E R
Sbjct: 79   SGSARSSNSVPL-RRNSTGGLPEKSSVSVTKRPSNVSSVASKKTTTLASDPLRRSLPEIR 137

Query: 665  RASLPSLSTRTVSKANVSETKKQXXXXXXXXXXXXXXXXXXXXKGLVRKPSLREXXXXXX 844
            R+SLPS+ T+T  +  VSET+K                     +  V++ S++       
Sbjct: 138  RSSLPSVVTKTSPRVGVSETRKSGPVSPLTRSLRTSTESDVRKQETVKRSSVKSASSISS 197

Query: 845  XXXXXXXXXXXXXXXXXXXXXXKVNXXXXXXXXXXXXXXXXXXXXXVDRGSTLSSRRKGS 1024
                                  K++                     +DR S+ S RRK +
Sbjct: 198  SSKRVTSSLDSSGSSTFRKVSSKLSSPSARSPAISSGSKVGSLSSSMDRSSSFSGRRKAA 257

Query: 1025 TPESRDSRFIVLPQVETKAGDDVRVDLRGH 1114
            TPESRDSRFIVLPQVE KAGDDVR+DLRGH
Sbjct: 258  TPESRDSRFIVLPQVEIKAGDDVRLDLRGH 287


>emb|CAN82174.1| hypothetical protein VITISV_015082 [Vitis vinifera]
          Length = 350

 Score =  122 bits (305), Expect = 2e-25
 Identities = 81/210 (38%), Positives = 107/210 (50%), Gaps = 1/210 (0%)
 Frame = +2

Query: 488  SKTSLSSNTDPVKRRSSTGGIVGKQSVS-DKKFDNAASVVGKKTTTLDSDSVKRSSVEPR 664
            S ++ SSN+ P+ RR+STGG+  K SVS  K+  N +SV  KKTTTL SD ++RS  E R
Sbjct: 79   SGSARSSNSVPL-RRNSTGGLPEKSSVSVTKRPSNVSSVASKKTTTLASDPLRRSLPEIR 137

Query: 665  RASLPSLSTRTVSKANVSETKKQXXXXXXXXXXXXXXXXXXXXKGLVRKPSLREXXXXXX 844
            R+SLPS+ T+T  +  VSET+K                     +  V++ S++       
Sbjct: 138  RSSLPSVVTKTSPRVGVSETRKSGPVSPLTRSLRTSTESDVRKQETVKRSSVKSASSISS 197

Query: 845  XXXXXXXXXXXXXXXXXXXXXXKVNXXXXXXXXXXXXXXXXXXXXXVDRGSTLSSRRKGS 1024
                                  K++                     +DR S+ S RRK +
Sbjct: 198  SSKRVTSSLDSSGSSTFRKVSSKLSSPSARSPAISSGSKVGSLSSSMDRSSSFSGRRKAA 257

Query: 1025 TPESRDSRFIVLPQVETKAGDDVRVDLRGH 1114
            TPESRDSRFIVLPQVE KAGDDVR+DLRGH
Sbjct: 258  TPESRDSRFIVLPQVEIKAGDDVRLDLRGH 287


>ref|XP_002523203.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus
            communis] gi|223537610|gb|EEF39234.1| protein
            phosphatases pp1 regulatory subunit, putative [Ricinus
            communis]
          Length = 1582

 Score =  111 bits (277), Expect = 4e-22
 Identities = 80/208 (38%), Positives = 101/208 (48%), Gaps = 1/208 (0%)
 Frame = +2

Query: 494  TSLSSNTDPVKRRSSTGGIVGKQSVSDKKFDNAASVVGKKTTTLDSDSVKRSSVEPRRAS 673
            +S +SN+ PV RR STGG+  K S   +      SV GK T  + SD V+RS  E RR+S
Sbjct: 75   SSRNSNSVPVARRVSTGGVSEKSSAVKQP----NSVAGKNTPAV-SDPVRRSLPELRRSS 129

Query: 674  LPSLSTRTVSKANVSETKKQXXXXXXXXXXXXXXXXXXXXKGLVRKPSLREXXXXXXXXX 853
            LPS++T++VS+A+VS  +K                       +V+KPS++          
Sbjct: 130  LPSVATKSVSRASVSGARKSAPATPLDRSLRSSTGSDISKPEIVKKPSVKPALSVSSSSK 189

Query: 854  XXXXXXXXXXXXXXXXXXX-KVNXXXXXXXXXXXXXXXXXXXXXVDRGSTLSSRRKGSTP 1030
                                KV+                     VDR S LS RRK  TP
Sbjct: 190  RVSSISLDSTGSSASRKTVSKVSSPSARSPSVSSGMRTGSLSTSVDRSSNLSGRRKMGTP 249

Query: 1031 ESRDSRFIVLPQVETKAGDDVRVDLRGH 1114
            ESRDSRFIVLPQVE KAGDDVR+DLRGH
Sbjct: 250  ESRDSRFIVLPQVEIKAGDDVRLDLRGH 277


>ref|XP_003547568.1| PREDICTED: uncharacterized protein LOC100807099 [Glycine max]
          Length = 1690

 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 33/43 (76%), Positives = 37/43 (86%)
 Frame = +2

Query: 986  DRGSTLSSRRKGSTPESRDSRFIVLPQVETKAGDDVRVDLRGH 1114
            DR S +S RRKGST +SRDSRFIVLPQVE KA DD+R+DLRGH
Sbjct: 221  DRTSAMSGRRKGSTADSRDSRFIVLPQVEIKANDDLRLDLRGH 263


>ref|NP_181015.7| Outer arm dynein light chain 1 protein [Arabidopsis thaliana]
            gi|330253915|gb|AEC09009.1| Outer arm dynein light chain
            1 protein [Arabidopsis thaliana]
          Length = 1708

 Score = 67.8 bits (164), Expect = 5e-09
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +2

Query: 983  VDRGSTLSSRRKGSTPESRDSRFIVLPQVETKAGDDVRVDLRGH 1114
            +DR S  S R+K STPESRDSR I+LP+VE KAGDD+R+DLRGH
Sbjct: 235  LDRTSNFSGRKKTSTPESRDSRLIILPKVEVKAGDDMRLDLRGH 278


Top