BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023491
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    58   7e-07
gb|EEE54019.1| hypothetical protein OsJ_00679 [Oryza sativa Japo...    56   3e-06
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...    56   3e-06
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    55   5e-06
emb|CAE04633.3| OSJNBa0028I23.15 [Oryza sativa Japonica Group]         55   5e-06

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/86 (34%), Positives = 46/86 (53%)
 Frame = +3

Query: 60   DSLIWLGNRKGTYSVKSAFKCIAKEESIPHCSSVNFKSLKSIWNLKVESSIRLFLWKLYL 239
            DSL+WL  + G Y+ K+ +  +AK  S P  S ++F   K+IW +     ++ FLWK   
Sbjct: 935  DSLVWLPVKSGEYTTKTGY-ALAKLNSFP-ASQLDFNWQKNIWKIHTSPKVKHFLWKAMK 992

Query: 240  QFLPTGERLMNRKFKGYLSCCFCYKT 317
              LP GE L  R  +  ++C  C +T
Sbjct: 993  GALPVGEALSRRNIEAEVTCKRCGQT 1018


>gb|EEE54019.1| hypothetical protein OsJ_00679 [Oryza sativa Japonica Group]
          Length = 185

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/87 (32%), Positives = 44/87 (50%)
 Frame = +3

Query: 48  SVSSDSLIWLGNRKGTYSVKSAFKCIAKEESIPHCSSVNFKSLKSIWNLKVESSIRLFLW 227
           S   D  IW   + G +SVKS +  I     I H         + +W +KV   I++F+W
Sbjct: 72  SNEKDCFIWSLYKNGHFSVKSMYNAIINSNVIIH--------KRILWKVKVPLKIKVFMW 123

Query: 228 KLYLQFLPTGERLMNRKFKGYLSCCFC 308
            L+ + + T + L+ RK++G   CCFC
Sbjct: 124 FLHKKVILTKDNLIKRKWRGNKQCCFC 150


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1469

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +3

Query: 21   LISLIYRRPSVSSDSLIWLGNRKGTYSVKSAFKCIAKEESIPHCSS-----VNFKSLKSI 185
            +I  I    S+ SD L W  +R G +SV+S +  +        CSS     VN KS K I
Sbjct: 1136 MILKIRTSASLESDFLAWHPDRLGKFSVRSVYHLVVSLAETGDCSSSTEVLVN-KSWKRI 1194

Query: 186  WNLKVESSIRLFLWKLYLQFLPTGERLMNRKFKGYLSCCFC 308
            W   V   +R+F WK     LPT +    R  +   +CC C
Sbjct: 1195 WACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCIC 1235


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/81 (39%), Positives = 43/81 (53%)
 Frame = +3

Query: 57  SDSLIWLGNRKGTYSVKSAFKCIAKEESIPHCSSVNFKSLKSIWNLKVESSIRLFLWKLY 236
           SD+ IW     G Y+VKSA++ I  +   PH S+ N  S  +IWNL +   +R FLW+L 
Sbjct: 77  SDTRIWKTTTTGNYTVKSAYR-ICSDLLHPHDSAHNNSSWMNIWNLNIPHRVRAFLWRLA 135

Query: 237 LQFLPTGERLMNRKFKGYLSC 299
              LPT   L  R  +   SC
Sbjct: 136 HNCLPTRVNLNARGIQCEESC 156


>emb|CAE04633.3| OSJNBa0028I23.15 [Oryza sativa Japonica Group]
          Length = 593

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
 Frame = +3

Query: 60  DSLIWLGNRKGTYSVKSAFKCIAKEESIPHCSSVNFKSLKSIWNLKVESSIRLFLWKLYL 239
           D   W  ++ GT++V S +K +     IP  S         IW L++   I++FLW L  
Sbjct: 448 DRFTWDASKNGTFTVNSMYKKLMFGNVIPRQSF--------IWKLRLPLKIKIFLWYLKE 499

Query: 240 QFLPTGERLMNRKFKGYLSCCFC--YKTIEF 326
             + T + L  R++KG L CCFC  ++TI++
Sbjct: 500 GVILTKDNLAKRRWKGSLRCCFCRSHETIQY 530