BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023458
         (1297 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    68   6e-09
ref|XP_003594075.1| F-box protein [Medicago truncatula] gi|35548...    63   1e-07
ref|XP_003611124.1| F-box family protein [Medicago truncatula] g...    62   2e-07
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    62   4e-07
ref|XP_002510562.1| conserved hypothetical protein [Ricinus comm...    62   4e-07

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 79/300 (26%), Positives = 117/300 (39%), Gaps = 28/300 (9%)
 Frame = +1

Query: 133 LPNEIIMDIFSRLPARLIFQCRHXXXXXXXXXXXXXFVNMHLAR----ATLVIAIHRRPF 300
           LP E+I +I  RLPA+ +  CR              FV +HL      ++ +  I R   
Sbjct: 4   LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTS 63

Query: 301 RMSYS--SQNGIYKDKVLMYFIDDKNKEMVPKSMHIIFSCTGYSMLVLYGSYNGLLLFEN 474
            + Y    QN +  D V +            K ++    C  + + VL GS NGLL   N
Sbjct: 64  HVHYMDFEQNLVLNDCVTL------------KELNHPLMCYNHGIKVL-GSVNGLLCISN 110

Query: 475 CVIYI-FWNPVTEEQTIV------------KKPSTVATHGFFFDPKTREYKVLYVK---- 603
            V  I  WNP T +  +V             K  +V   GF +D    +YK++ +     
Sbjct: 111 VVDDIAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGG 170

Query: 604 --PRRLRFQFTLYSL---ATRCSGTIAKCSHPPWVKTPVILNGALHWVVDRFYYKCLYRR 768
              R    +  +YSL   + R  G +  C H P     V  NGALHWVV           
Sbjct: 171 GGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGA-NGVFANGALHWVVGE-------NP 222

Query: 769 SLLFSESILSFDMNTETIRTMARPGNQYGTGVDNTYVHLLKKEGSLCFCDTSLYPSMNFW 948
               +  +++ D+  E  R + +P  +Y     N Y+ L    G LCF    L   ++ W
Sbjct: 223 ESNVANIVVALDLGVEDYREVLQP--EYKD--KNFYIDLGVLRGCLCFLANFLGERVDVW 278


>ref|XP_003594075.1| F-box protein [Medicago truncatula] gi|355483123|gb|AES64326.1|
           F-box protein [Medicago truncatula]
          Length = 391

 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
 Frame = +1

Query: 124 AVDLPNEIIMDIFSRLPARLIFQCRHXXXXXXXXXXXXXFVNMHLARATLVIAIHRRPFR 303
           A DLP EI+ +IFSRLP R + + R              F+N+HL  +     I R    
Sbjct: 2   AADLPPEILSEIFSRLPVRSLLRFRSTSKSLKSLIDSHKFINLHLKNSFNFNFILRH--- 58

Query: 304 MSYSSQNGIYKDKVLMYFIDDKNKEMVPKSMHIIFSCTGYSMLVLYGSYNGLLLFENCVI 483
                 N +Y+    ++F      + VP ++    +    S + L GS NGLL   N  I
Sbjct: 59  ----KNNDLYQ----LHF--PNLTDAVPLNLPFPRNIDPTSSMDLIGSCNGLLAISNGQI 108

Query: 484 YIFWNPVTEEQTIVKKPSTVATHGFFFDPKTREYKVLYV----KPRRLRF--QFTLYSLA 645
              +     E TI    + +  HGF FDP T +YK+L +     P    +  Q  L+SL 
Sbjct: 109 AFTYPNHATEITIWNTNTRLCFHGFGFDPLTDDYKLLRISWLCNPPNSFYDSQIRLFSLK 168

Query: 646 TRCSGTIAKCSHPP--WVKTPVILNGALHWVVDR 741
           T     I    + P  +    V +  ++HW++ R
Sbjct: 169 TNSWKMIPVMPYVPHYFETNGVFVFTSVHWIMSR 202


>ref|XP_003611124.1| F-box family protein [Medicago truncatula]
           gi|355512459|gb|AES94082.1| F-box family protein
           [Medicago truncatula]
          Length = 551

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 74/327 (22%), Positives = 121/327 (37%), Gaps = 54/327 (16%)
 Frame = +1

Query: 130 DLPNEIIMDIFSRLPARLIFQCRHXXXXXXXXXXXXXFVNMHLARATLVIAIHR------ 291
           +LP+ +   I  +LP + +  CR              F  +   RA +   I        
Sbjct: 33  NLPSHLTTHILLQLPIKSLLMCRCVCKTWNTLISEPHFAKLQFERAPVSFVIRNLDNIGV 92

Query: 292 ---------RPFRMSYSSQNGIYKDKVLMYFI------DDKN-----KEMVPKSMHIIFS 411
                       +    S N +  D +    +       DKN     K +  KS     +
Sbjct: 93  SRNLYLLECEAEKFEIGSNNHVKLDPIFELPLCNDISSRDKNDAKLYKVIKNKSKERYIT 152

Query: 412 CTGY-SMLVLYGSYNGLLLFENCVI---YIFWNPVTEEQTIVKKPSTVATH--------G 555
           CT       +  S NGLL      I    +  NPVT E TI+ + +T +          G
Sbjct: 153 CTSSRDKFGIVNSCNGLLCLSETSIGSPLVICNPVTREFTILPELTTTSDWFNSARVQAG 212

Query: 556 FFFDPKTREYKVLYV------KPRRLRFQFTLYSLATRCSGTIAKCSHPPWVK-----TP 702
           F F PKT EYKV+ +      +  RL F+  +  + T  + +       P +       P
Sbjct: 213 FSFQPKTNEYKVIIIWNKYVRRDNRLVFERVVLEIHTLGTPSWRNVEVDPQISFLKLLNP 272

Query: 703 VILNGALHWVVDRFYYKCLYRRSLLFSESILSFDMNTETIRTMARPGNQYGTGVDNTYVH 882
             +NGALHW++   + +          +SIL F+  +E +++   P + +G   DN + H
Sbjct: 273 TCVNGALHWIIFEAWQQ----------KSILCFNFESERLQSFPSPPHVFGNH-DNGFPH 321

Query: 883 -----LLKKEGSLCFCDTSLYPSMNFW 948
                L + +G L  C  S   ++  W
Sbjct: 322 SMPIRLGELKGFLYICHRSSLENVTMW 348


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 25/298 (8%)
 Frame = +1

Query: 130 DLPNEIIMDIFSRLPARLIFQCRHXXXXXXXXXXXXXFVNMHLARATLVIAIHRRPFRMS 309
           DLP E+  +I SR+PA+ + + R              F+ +HL+++   + I R+  R  
Sbjct: 3   DLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLSKSRDSVIILRQHSR-- 60

Query: 310 YSSQNGIYKDKVLMYFIDDKNKEMVPKSMHIIFSCTGYSMLVLYGSYNGLLLFENCVIYI 489
                        +Y +D  + + V +  H +  C    + VL GS NGLL   N    I
Sbjct: 61  -------------LYELDLNSMDRVKELDHPLM-CYSNRIKVL-GSCNGLLCICNIADDI 105

Query: 490 -FWNPVTEEQTIV----------KKPSTVAT------HGFFFDPKTREYKVLYVK----- 603
            FWNP   +  I+           + +T+ T      +GF +D  T +YK++ +      
Sbjct: 106 AFWNPTIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDL 165

Query: 604 -PRRLRFQFTLYSLATRCSGTIAKCSHPPWVKTP--VILNGALHWVVDRFYYKCLYRRSL 774
             R       +Y++ T    T+    +         V ++GALHWVV R     L   S 
Sbjct: 166 HNRSFDSHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHWVVTR----DLEPES- 220

Query: 775 LFSESILSFDMNTETIRTMARPGNQYGTGVDNTYVHLLKKEGSLCFCDTSLYPSMNFW 948
              + I++FD+  E  R +A PG     G  +  V LL+  G LC  +       + W
Sbjct: 221 --RDLIVAFDLRFEVFREVALPGTV--DGKFDMDVALLR--GMLCIIENRGSDGFDVW 272


>ref|XP_002510562.1| conserved hypothetical protein [Ricinus communis]
           gi|223551263|gb|EEF52749.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 263

 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
 Frame = +1

Query: 64  CMTWLAILWGRMFSLFTQIEAVD---LPNEIIMDIFSRLPARLIFQCRHXXXXXXXXXXX 234
           C  W+  +W  + S+F  ++  D   LPN+II +I SRLPA  + +C             
Sbjct: 5   CFIWIVHIWKELLSIFPPLKGGDVRPLPNDIIFEILSRLPADEVLKCCSVSKEWKALVLT 64

Query: 235 XXFVNMHLARATLVIAI-HRRPFRMSYSSQNGIYKDKVLMYFIDD--KNKEMVPKSMHII 405
             F    L RA  ++ I +RRP       ++  +   + ++F+D   KN  M+ K  +  
Sbjct: 65  PFFSQAQLTRACPIVFIQYRRP-------ESHFFMHGLDVFFLDQGAKNNRMIEKVYNKP 117

Query: 406 FSCTGYSMLVLYGSYNGLLLFEN------CVIYIFWNPVTEEQTIVKKP 534
                  M  L  SYNG ++F+         I+  +NP+T+ +  ++ P
Sbjct: 118 TLNMQKIMPKLAFSYNGFIIFKEYKSFSPSTIFFIYNPITQAEITLENP 166