BLASTX nr result

ID: Coptis23_contig00023454 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023454
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEC79683.1| hypothetical protein OsI_20948 [Oryza sativa Indi...    94   1e-24
ref|NP_001146904.1| LOC100280512 [Zea mays] gi|195604968|gb|ACG2...    93   1e-24
ref|XP_002319202.1| predicted protein [Populus trichocarpa] gi|2...    87   2e-24
ref|NP_001056297.1| Os05g0558900 [Oryza sativa Japonica Group] g...    92   2e-24
ref|XP_002523199.1| phenylalanyl-tRNA synthetase beta chain, put...    88   3e-24

>gb|EEC79683.1| hypothetical protein OsI_20948 [Oryza sativa Indica Group]
          Length = 596

 Score = 93.6 bits (231), Expect(2) = 1e-24
 Identities = 42/62 (67%), Positives = 52/62 (83%)
 Frame = +3

Query: 21  VIYKIEIGANRYDLLCFEGLVQALRIFKGLDEIPNYRVSNIPRDSMLKIHVKPETCEIRP 200
           VIYKIE+ ANRYDLLC EGL +ALRIF G +  P Y++S IPRDSML++HVKP+T +IRP
Sbjct: 65  VIYKIEVAANRYDLLCLEGLARALRIFTGTEATPMYKISCIPRDSMLQMHVKPQTSQIRP 124

Query: 201 YL 206
           Y+
Sbjct: 125 YV 126



 Score = 44.7 bits (104), Expect(2) = 1e-24
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 197 PVFVCAILRDITFDEASFKSFIDLQDK 277
           P  VCA+LR +TFDEA + SFIDLQDK
Sbjct: 124 PYVVCAVLRGVTFDEARYNSFIDLQDK 150


>ref|NP_001146904.1| LOC100280512 [Zea mays] gi|195604968|gb|ACG24314.1|
           phenylalanyl-tRNA synthetase beta chain [Zea mays]
          Length = 594

 Score = 93.2 bits (230), Expect(2) = 1e-24
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +3

Query: 21  VIYKIEIGANRYDLLCFEGLVQALRIFKGLDEIPNYRVSNIPRDSMLKIHVKPETCEIRP 200
           VIYKIE+ ANRYDLLCFEGL +ALR+F G +  P ++VS+IPR SML++HVKPET +IRP
Sbjct: 63  VIYKIEVAANRYDLLCFEGLARALRVFTGTEASPVFQVSSIPRGSMLQMHVKPETSKIRP 122

Query: 201 YL 206
           Y+
Sbjct: 123 YI 124



 Score = 45.1 bits (105), Expect(2) = 1e-24
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 197 PVFVCAILRDITFDEASFKSFIDLQDK 277
           P  VCA+LR +TFDEA + SFIDLQDK
Sbjct: 122 PYIVCAVLRGVTFDEARYNSFIDLQDK 148


>ref|XP_002319202.1| predicted protein [Populus trichocarpa] gi|222857578|gb|EEE95125.1|
           predicted protein [Populus trichocarpa]
          Length = 598

 Score = 87.4 bits (215), Expect(2) = 2e-24
 Identities = 38/68 (55%), Positives = 51/68 (75%)
 Frame = +3

Query: 3   GXXXXXVIYKIEIGANRYDLLCFEGLVQALRIFKGLDEIPNYRVSNIPRDSMLKIHVKPE 182
           G     +IYKIE+ ANRYDLLC EG+ QALR+F    + P Y +++IP+DSMLK+HVKP+
Sbjct: 59  GDDDGEIIYKIEVPANRYDLLCLEGIAQALRVFNEEQQTPTYTLASIPKDSMLKMHVKPQ 118

Query: 183 TCEIRPYL 206
           T  IRP++
Sbjct: 119 TSSIRPFV 126



 Score = 49.7 bits (117), Expect(2) = 2e-24
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 197 PVFVCAILRDITFDEASFKSFIDLQDK 277
           P  VCA+LRDITFDEAS+ SFIDLQDK
Sbjct: 124 PFVVCAVLRDITFDEASYNSFIDLQDK 150


>ref|NP_001056297.1| Os05g0558900 [Oryza sativa Japonica Group]
           gi|50878320|gb|AAT85095.1| putative phenylalanyl-tRNA
           synthetase beta chain (PheRS) [Oryza sativa Japonica
           Group] gi|113579848|dbj|BAF18211.1| Os05g0558900 [Oryza
           sativa Japonica Group] gi|215678744|dbj|BAG95181.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 596

 Score = 92.4 bits (228), Expect(2) = 2e-24
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = +3

Query: 21  VIYKIEIGANRYDLLCFEGLVQALRIFKGLDEIPNYRVSNIPRDSMLKIHVKPETCEIRP 200
           VIYKIE+ ANRYDLLC EGL +ALRIF G +  P Y++S IPRDSML +HVKP+T +IRP
Sbjct: 65  VIYKIEVAANRYDLLCLEGLARALRIFTGTEATPMYKISCIPRDSMLLMHVKPQTSQIRP 124

Query: 201 YL 206
           Y+
Sbjct: 125 YV 126



 Score = 44.7 bits (104), Expect(2) = 2e-24
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 197 PVFVCAILRDITFDEASFKSFIDLQDK 277
           P  VCA+LR +TFDEA + SFIDLQDK
Sbjct: 124 PYVVCAVLRGVTFDEARYNSFIDLQDK 150


>ref|XP_002523199.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus
           communis] gi|223537606|gb|EEF39230.1| phenylalanyl-tRNA
           synthetase beta chain, putative [Ricinus communis]
          Length = 593

 Score = 88.2 bits (217), Expect(2) = 3e-24
 Identities = 40/68 (58%), Positives = 50/68 (73%)
 Frame = +3

Query: 3   GXXXXXVIYKIEIGANRYDLLCFEGLVQALRIFKGLDEIPNYRVSNIPRDSMLKIHVKPE 182
           G     +IYKIE+ ANRYDLLC EG+ QALRIF   +E P Y ++NI + +MLK+HVKPE
Sbjct: 56  GNEDEEIIYKIEVPANRYDLLCLEGIAQALRIFNKQEETPKYTLANISKQAMLKMHVKPE 115

Query: 183 TCEIRPYL 206
           T  IRPY+
Sbjct: 116 TSSIRPYV 123



 Score = 48.5 bits (114), Expect(2) = 3e-24
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +2

Query: 197 PVFVCAILRDITFDEASFKSFIDLQDK 277
           P  VCA+LRD+TFDEAS+ SFIDLQDK
Sbjct: 121 PYVVCAVLRDMTFDEASYNSFIDLQDK 147


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