BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023444
         (815 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    80   4e-13
gb|ABK28199.1| unknown [Arabidopsis thaliana]                          77   5e-12
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...    77   5e-12
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...    77   5e-12
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ...    76   8e-12

>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 6/221 (2%)
 Frame = +3

Query: 147 FLLYCWFIWKARCEQIFQNN--TQPIPNYINHLK---CIVNNXXXXXXXXXXXXELLVRW 311
           F++  W+ WK RC  IF  N   +    +I  L     I N             E LV W
Sbjct: 94  FVMAVWWGWKWRCGNIFGGNGKCRDRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSW 153

Query: 312 KSPPENWWVLNTDGSCLENSGKIGIGGVIRDHFGRVVAGFSFYMGVGINNIAEALAILFR 491
            SP + W  LNTDG+   N G    GGV+RDH G  + GF+  +GV    +AE   + + 
Sbjct: 154 VSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYG 213

Query: 492 XXXXXXXXXXXXXIQTDSQ-VQQSLEKTTSEDWKLNSILSKCRNGLKNFSMVQMRKIFRE 668
                        ++ DS+ V   L    ++   L+ +L  C + L    +V++  ++RE
Sbjct: 214 LFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYRE 273

Query: 669 ANAVADKLAVMGSRDQATGFFFDLPNDELKKLVFEDIIGKS 791
           AN +AD LA             +   D +  ++ +D+ G S
Sbjct: 274 ANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDVAGVS 314


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 7/225 (3%)
 Frame = +3

Query: 147 FLLYCWFIWKARCEQIF--QNNTQPIPNYINHLKCIVNNXXXXXXXXXXXX----ELLVR 308
           F L  W+ WK RC  IF  Q+  +    ++  L    +                 E L+ 
Sbjct: 86  FALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIA 145

Query: 309 WKSPPENWWVLNTDGSCLENSGKIGIGGVIRDHFGRVVAGFSFYMGVGINNIAEALAILF 488
           W  P E WW LNTDG+   N G    GGV+RD  G    GF+  +GV    +AE   + +
Sbjct: 146 WSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYY 205

Query: 489 RXXXXXXXXXXXXXIQTDSQVQQSLEKT-TSEDWKLNSILSKCRNGLKNFSMVQMRKIFR 665
                         I+ DS++     K   +E   L+ ++  C + +     V++  ++R
Sbjct: 206 GLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYR 265

Query: 666 EANAVADKLAVMGSRDQATGFFFDLPNDELKKLVFEDIIGKSSIR 800
           EAN +AD LA              L  D L+ ++ +D  G +  R
Sbjct: 266 EANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSR 310


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 7/225 (3%)
 Frame = +3

Query: 147 FLLYCWFIWKARCEQIF--QNNTQPIPNYINHLKCIVNNXXXXXXXXXXXX----ELLVR 308
           F L  W+ WK RC  IF  Q+  +    ++  L    +                 E L+ 
Sbjct: 86  FALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIA 145

Query: 309 WKSPPENWWVLNTDGSCLENSGKIGIGGVIRDHFGRVVAGFSFYMGVGINNIAEALAILF 488
           W  P E WW LNTDG+   N G    GGV+RD  G    GF+  +GV    +AE   + +
Sbjct: 146 WSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYY 205

Query: 489 RXXXXXXXXXXXXXIQTDSQVQQS-LEKTTSEDWKLNSILSKCRNGLKNFSMVQMRKIFR 665
                         I+ DS++    L+   +E   L+ ++  C + +     V++  ++R
Sbjct: 206 GLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCHDFISRDWRVRISHVYR 265

Query: 666 EANAVADKLAVMGSRDQATGFFFDLPNDELKKLVFEDIIGKSSIR 800
           EAN +AD LA              L  D L+ ++ +D  G +  R
Sbjct: 266 EANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSR 310


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 7/225 (3%)
 Frame = +3

Query: 147 FLLYCWFIWKARCEQIF--QNNTQPIPNYINHLKCIVNNXXXXXXXXXXXX----ELLVR 308
           F L  W+ WK RC  IF  Q+  +    ++  L    +                 E L+ 
Sbjct: 86  FALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTLSGGHGERVERLIA 145

Query: 309 WKSPPENWWVLNTDGSCLENSGKIGIGGVIRDHFGRVVAGFSFYMGVGINNIAEALAILF 488
           W  P E WW LNTDG+   N G    GGV+RD  G    GF+  +GV    +AE   + +
Sbjct: 146 WSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYY 205

Query: 489 RXXXXXXXXXXXXXIQTDSQVQQSLEKT-TSEDWKLNSILSKCRNGLKNFSMVQMRKIFR 665
                         I+ DS++     K   +E   L+ ++  C + +     V++  ++R
Sbjct: 206 GLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYR 265

Query: 666 EANAVADKLAVMGSRDQATGFFFDLPNDELKKLVFEDIIGKSSIR 800
           EAN +AD LA              L  D L+ ++ +D  G +  R
Sbjct: 266 EANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSR 310


>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 308

 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 13/231 (5%)
 Frame = +3

Query: 147 FLLYCWFIWKARCEQIFQNNTQ-----------PIPNYINHL-KCIVNNXXXXXXXXXXX 290
           F +  W+ WK RC  IF  NT+            +  Y  HL   +V +           
Sbjct: 81  FAVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVVEVYRAHLGNALVGSTQPRV------ 134

Query: 291 XELLVRWKSPPENWWVLNTDGSCLENSGKIGIGGVIRDHFGRVVAGFSFYMGVGINNIAE 470
            E L+ W  P   W  +NTDG+   N G    GGV+RD  G    GFS  +G      AE
Sbjct: 135 -ERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAE 193

Query: 471 ALAILFRXXXXXXXXXXXXXIQTDSQVQQSLEKT-TSEDWKLNSILSKCRNGLKNFSMVQ 647
              + +              ++ DS+      KT  S+   L+ ++  C N L+   +V+
Sbjct: 194 LWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVR 253

Query: 648 MRKIFREANAVADKLAVMGSRDQATGFFFDLPNDELKKLVFEDIIGKSSIR 800
           +  ++REAN +AD LA            FD   D +  L+ ED +G + +R
Sbjct: 254 IVYVYREANCLADGLANYTILLSLGFHSFDFVPDAMSSLLKEDTLGSTQLR 304