BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023382
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15206.3| unnamed protein product [Vitis vinifera]              230   1e-58
emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]   229   2e-58
ref|XP_003598017.1| Pentatricopeptide repeat-containing protein ...   208   3e-52
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi...   207   6e-52
emb|CBI39775.3| unnamed protein product [Vitis vinifera]              207   6e-52

>emb|CBI15206.3| unnamed protein product [Vitis vinifera]
          Length = 416

 Score =  230 bits (586), Expect = 1e-58
 Identities = 104/165 (63%), Positives = 138/165 (83%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           VS SLIDMYAKCG +E A+ +F+ MK RN+VSWN+MILGLAMHG+ ++ALELF +M E K
Sbjct: 189 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 248

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           +  PN+VTFLGVLCACSH G+V+EG++YFD M RD+ + P ++H+G MVD+LGRAG +EE
Sbjct: 249 LATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEE 308

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEP 497
           A+ LIKSMP++ + IVW  LL+ACR+HGN++LAE+V  +L+ELEP
Sbjct: 309 AYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEP 353



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/162 (27%), Positives = 82/162 (50%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           V  +L+ MY    +IE A  +F  M    LV+WN++I      G  ++A+ELF +M +  
Sbjct: 88  VRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSG 147

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           ++ P+D TF+  L AC+  G +D G++    +     L   V     ++D+  + G +E 
Sbjct: 148 LK-PDDATFVVTLSACAALGELDIGRRVHSCIDHT-GLGNVVSVSNSLIDMYAKCGVVEA 205

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIE 488
           A+E+   M    + + W  ++    +HG+   A E+  +++E
Sbjct: 206 AYEIFNKM-KGRNIVSWNTMILGLAMHGHGDEALELFSKMLE 246


>emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  229 bits (584), Expect = 2e-58
 Identities = 104/165 (63%), Positives = 137/165 (83%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           VS SLIDMYAKCG +E A+ +F+ MK RN+VSWN+MILGLAMHG+ ++ALELF +M E K
Sbjct: 289 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 348

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           +  PN+VTFLGVLCACSH G+V+EG++YFD M RD+ + P ++H+G MVD+LGRAG +EE
Sbjct: 349 LATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEE 408

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEP 497
           A+ LIKSMP++ + IVW  LL+ACR+HGN++LAE+V   L+ELEP
Sbjct: 409 AYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEP 453



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/162 (27%), Positives = 82/162 (50%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           V  +L+ MY    +IE A  +F  M    LV+WN++I      G  ++A+ELF +M +  
Sbjct: 188 VRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSG 247

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           ++ P+D TF+  L AC+  G +D G++    +     L   V     ++D+  + G +E 
Sbjct: 248 LK-PDDATFVVTLSACAALGELDIGRRVHSCIDHT-GLGNVVSVSNSLIDMYAKCGVVEA 305

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIE 488
           A+E+   M    + + W  ++    +HG+   A E+  +++E
Sbjct: 306 AYEIFNKM-KGRNIVSWNTMILGLAMHGHGDEALELFSKMLE 346


>ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487065|gb|AES68268.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 479

 Score =  208 bits (530), Expect = 3e-52
 Identities = 96/162 (59%), Positives = 127/162 (78%)
 Frame = +3

Query: 12  SLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMKIEV 191
           +L+DMYAKCG +E+A+  FSNMK +N+VSWN MILG A HG  E+AL LF +M    +E 
Sbjct: 258 ALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVER 317

Query: 192 PNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEEAHE 371
           P+++TFL VLCACSH GLVDEG++YF+ M RD+ + P ++H+GCMVDLLGRAG   EA+E
Sbjct: 318 PDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYE 377

Query: 372 LIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEP 497
           LIKSMP++ + I+W  LL+ACR +GNV+L E+V   L+ELEP
Sbjct: 378 LIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEP 419



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQE-- 176
           V  SLI MY    +IE AH +F  M   NLVSWNS+I      G   +A++LF +M +  
Sbjct: 147 VRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQ 206

Query: 177 ---MKIEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRD--FRLMPKVEHFGCMVDLLG 341
              M+++ P+  T +  L AC   G +D G+K   S  RD        +  F  +VD+  
Sbjct: 207 HNGMELQ-PDHATLVVTLSACGAIGSLDFGRK-VHSFVRDGVNSFGESISVFNALVDMYA 264

Query: 342 RAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLI 485
           + G +EEA+E   +M    + + W  ++     HGN + A  +  R++
Sbjct: 265 KCGAVEEAYETFSNMKR-KNVVSWNVMILGFASHGNGEEALALFTRML 311


>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  207 bits (528), Expect = 6e-52
 Identities = 92/169 (54%), Positives = 131/169 (77%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           ++ +L+DMYAKCG+I  A  +F     R++  WN++I G AMHGY E+AL++F +M+   
Sbjct: 396 LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG 455

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           ++ PND+TF+G+L ACSH GLV EGKK F+ M   F L+P++EH+GCMVDLLGRAG ++E
Sbjct: 456 VK-PNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 514

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCG 509
           AHE+IKSMP+ P+ IVWGAL++ACR+H N +L E  A +L+E+EP++CG
Sbjct: 515 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG 563



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           V  +L+ MY +C  +E A LVF  M  R++VSW++MI  L+ +   + ALEL  +M  M+
Sbjct: 161 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQ 220

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFG-----CMVDLLGRA 347
           +  P++V  + ++   +    +  GK     + R+       EH G      ++D+  + 
Sbjct: 221 VR-PSEVAMVSMVNLFADTANMRMGKAMHAYVIRN----SNNEHMGVPTTTALLDMYAKC 275

Query: 348 GHIEEAHELIKSMPMDPHPIVWGALLSAC 434
           GH+  A +L   +      + W A+++ C
Sbjct: 276 GHLGLARQLFNGLTQKT-VVSWTAMIAGC 303


>emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  207 bits (528), Expect = 6e-52
 Identities = 98/169 (57%), Positives = 131/169 (77%)
 Frame = +3

Query: 3   VSASLIDMYAKCGEIEKAHLVFSNMKMRNLVSWNSMILGLAMHGYAEQALELFGQMQEMK 182
           +S +LIDMY KCG +E+A  VF  M+ R +VSW++MI GLAMHG AE+AL LF  M ++ 
Sbjct: 264 ISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 323

Query: 183 IEVPNDVTFLGVLCACSHRGLVDEGKKYFDSMTRDFRLMPKVEHFGCMVDLLGRAGHIEE 362
           IE PN VTF+G+L ACSH GL+ EG+++F SMTRD+ ++P++EH+GCMVDLL RAG + E
Sbjct: 324 IE-PNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 382

Query: 363 AHELIKSMPMDPHPIVWGALLSACRIHGNVKLAEEVALRLIELEPQSCG 509
           AHE I +MPM P+ +VWGALL ACR+H NV++AEE    L+EL+P + G
Sbjct: 383 AHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDG 431



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
 Frame = +3

Query: 96  SWNSMILGLAMHGYAEQALELFGQMQEMKIEVPNDVTFLGVLCACSHRGLVDEGKKYFDS 275
           SW SMI G    G A++A+ LF +M+E  ++  N+VT + VL AC+  G +D G +  + 
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC-NEVTVVAVLAACADLGALDLGMRIHEY 252

Query: 276 MTR-DFRLMPKVEHFGCMVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNV 452
             R  F+   ++ +   ++D+  + G +EEA ++ + M  +   + W A++    +HG  
Sbjct: 253 SNRHGFKRNVRISN--TLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRA 309

Query: 453 KLAEEVALRL 482
               E ALRL
Sbjct: 310 ----EEALRL 315