BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023335
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509474.1| Transcription regulatory protein SWI3, putat...    99   3e-19
ref|XP_002305423.1| chromatin remodeling complex subunit [Populu...    96   3e-18
ref|XP_002313800.1| chromatin remodeling complex subunit [Populu...    95   5e-18
emb|CBI32576.3| unnamed protein product [Vitis vinifera]               94   9e-18
ref|XP_003631607.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...    94   9e-18

>ref|XP_002509474.1| Transcription regulatory protein SWI3, putative [Ricinus communis]
           gi|223549373|gb|EEF50861.1| Transcription regulatory
           protein SWI3, putative [Ricinus communis]
          Length = 983

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = -2

Query: 249 AGTKADGSTKTASLADKLYKFEEAIPCSDVVLKPDLSTQAMPPQLFPESAFPDE-VKPEG 73
           A     G ++   L +KL+ FE   PC  V+ +P++S+ A+P   FP+S+  DE V+PEG
Sbjct: 238 ANADGGGRSEKELLLEKLFHFETIQPCLPVISRPNVSSPALPSGFFPDSSIADELVRPEG 297

Query: 72  PVVEYHCNSCSADCSRKRYHCQKQ 1
           P VEYHCNSCSADCSRKRYHCQ Q
Sbjct: 298 PAVEYHCNSCSADCSRKRYHCQTQ 321


>ref|XP_002305423.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222848387|gb|EEE85934.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1005

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 45/79 (56%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = -2

Query: 234 DGSTKTASLADKLYKFEEAIPCSDVVLKPDLSTQAMPPQLFPESAFPDEV-KPEGPVVEY 58
           DG+ K     +KL++FE    C  VV KP+ +    P +LFPESA  +E+ K EGP VEY
Sbjct: 232 DGAAKKDLSLEKLFRFEAIQTCPPVVTKPNFTAPTTPSRLFPESAIAEELAKLEGPSVEY 291

Query: 57  HCNSCSADCSRKRYHCQKQ 1
           HCNSCSADCSRKRYHCQK+
Sbjct: 292 HCNSCSADCSRKRYHCQKE 310


>ref|XP_002313800.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222850208|gb|EEE87755.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1010

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = -2

Query: 234 DGSTKTASLADKLYKFEEAIPCSDVVLKPDLSTQAMPPQLFPESAFPDEV-KPEGPVVEY 58
           D + K  S  +KL+ FE   PC  +V KP+L+      +LFPESA  +E+ K EGP VEY
Sbjct: 233 DEAAKKDSSLEKLFCFEAIQPCPSIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEY 292

Query: 57  HCNSCSADCSRKRYHCQKQ 1
           HCNSCSADCSRKRYHCQKQ
Sbjct: 293 HCNSCSADCSRKRYHCQKQ 311


>emb|CBI32576.3| unnamed protein product [Vitis vinifera]
          Length = 983

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
 Frame = -2

Query: 237 ADGSTKTA----SLADKLYKFEEAIPCSDVVLKPDLSTQAMPPQLFPESAFPDE-VKPEG 73
           A+G   TA    S  +KLY+F+    C  VV K ++S   M   LFPESAF +E V+ EG
Sbjct: 227 ANGDDDTAKQLDSSVEKLYRFDMVQSCPPVVPKANMSAPTMASGLFPESAFVEELVRSEG 286

Query: 72  PVVEYHCNSCSADCSRKRYHCQKQ 1
           P VEYHCNSCSADCSRKRYHCQKQ
Sbjct: 287 PSVEYHCNSCSADCSRKRYHCQKQ 310


>ref|XP_003631607.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Vitis vinifera]
          Length = 1012

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
 Frame = -2

Query: 237 ADGSTKTA----SLADKLYKFEEAIPCSDVVLKPDLSTQAMPPQLFPESAFPDE-VKPEG 73
           A+G   TA    S  +KLY+F+    C  VV K ++S   M   LFPESAF +E V+ EG
Sbjct: 256 ANGDDDTAKQLDSSVEKLYRFDMVQSCPPVVPKANMSAPTMASGLFPESAFVEELVRSEG 315

Query: 72  PVVEYHCNSCSADCSRKRYHCQKQ 1
           P VEYHCNSCSADCSRKRYHCQKQ
Sbjct: 316 PSVEYHCNSCSADCSRKRYHCQKQ 339