BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023317
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    68   1e-19
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    63   2e-19
emb|CAN77310.1| hypothetical protein VITISV_017493 [Vitis vinifera]    65   2e-19
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              67   5e-19
emb|CAN78055.1| hypothetical protein VITISV_001308 [Vitis vinifera]    66   7e-19

>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 68.2 bits (165), Expect(2) = 1e-19
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = -2

Query: 283 DQEKTAFVVEGGTFCYTRMPFGLKNVGATFQRLGEKMFESKIQKGIEIYI 134
           DQEKT+F+++ GT+CY  MPFGLKNVGA +QRL  +MF  ++ K +E+YI
Sbjct: 602 DQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYI 651



 Score = 52.8 bits (125), Expect(2) = 1e-19
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = -3

Query: 132 MVEKSMSEVEHLEGLRETFEILRKYNLKLNPDICTFGVTTGKFL 1
           M+ KS    +H++ L+  FE L KYN+KLNP  C FGVT+G+FL
Sbjct: 654 MLVKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFL 697


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 63.2 bits (152), Expect(2) = 2e-19
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -2

Query: 283  DQEKTAFVVEGGTFCYTRMPFGLKNVGATFQRLGEKMFESKIQKGIEIYI 134
            D+EKT F+ + GT+CY  MPFGLKN GAT+ RL  +MF  ++   +E+YI
Sbjct: 887  DREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYI 936



 Score = 57.4 bits (137), Expect(2) = 2e-19
 Identities = 24/44 (54%), Positives = 34/44 (77%)
 Frame = -3

Query: 132  MVEKSMSEVEHLEGLRETFEILRKYNLKLNPDICTFGVTTGKFL 1
            M+ KS+   EH+  LR+ F++L +YN+KLNP  CTFGVT+G+FL
Sbjct: 939  MLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFL 982


>emb|CAN77310.1| hypothetical protein VITISV_017493 [Vitis vinifera]
          Length = 1009

 Score = 64.7 bits (156), Expect(2) = 2e-19
 Identities = 26/50 (52%), Positives = 34/50 (68%)
 Frame = -2

Query: 283 DQEKTAFVVEGGTFCYTRMPFGLKNVGATFQRLGEKMFESKIQKGIEIYI 134
           D EKT F+ E GT+CY  MPFGLKN GAT+QR    +F   + K +E+Y+
Sbjct: 777 DMEKTTFITEWGTYCYKVMPFGLKNAGATYQRAATTLFHDMMHKDVEVYV 826



 Score = 55.8 bits (133), Expect(2) = 2e-19
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = -3

Query: 132 MVEKSMSEVEHLEGLRETFEILRKYNLKLNPDICTFGVTTGKFL 1
           M+ KS   V+HLE L   FE +RK+ L+LNP  CTFGVT+GK L
Sbjct: 829 MIVKSQGRVDHLEALERFFERIRKFRLRLNPKKCTFGVTSGKLL 872


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 67.4 bits (163), Expect(2) = 5e-19
 Identities = 29/50 (58%), Positives = 38/50 (76%)
 Frame = -2

Query: 283 DQEKTAFVVEGGTFCYTRMPFGLKNVGATFQRLGEKMFESKIQKGIEIYI 134
           DQEKT+F+ + G +CY  MPFGLKN GAT+QRL  KMF + + K +E+YI
Sbjct: 126 DQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYI 175



 Score = 51.6 bits (122), Expect(2) = 5e-19
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = -3

Query: 132 MVEKSMSEVEHLEGLRETFEILRKYNLKLNPDICTFGVTTGKFL 1
           M+ KS+ + +H++ L E F IL KY +KLNP  CTFGV +G+FL
Sbjct: 178 MLVKSLKKEDHVKHLEECFGILNKYQMKLNPAKCTFGVPSGEFL 221


>emb|CAN78055.1| hypothetical protein VITISV_001308 [Vitis vinifera]
          Length = 1901

 Score = 65.9 bits (159), Expect(2) = 7e-19
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -2

Query: 283  DQEKTAFVVEGGTFCYTRMPFGLKNVGATFQRLGEKMFESKIQKGIEIYI 134
            D EKTAF+ E GT+CY  MPFGLKN GAT+QR+   +F   + + +E+Y+
Sbjct: 1285 DMEKTAFITEWGTYCYRVMPFGLKNAGATYQRVATTLFHDMMHRDVEVYV 1334



 Score = 52.8 bits (125), Expect(2) = 7e-19
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = -3

Query: 132  MVEKSMSEVEHLEGLRETFEILRKYNLKLNPDICTFGVTTGKFL 1
            M+ KS    +HL+ L   FE +RK+ L+LNP  CTFGVT+GK L
Sbjct: 1337 MIVKSRGRADHLDALERFFERIRKFRLRLNPKKCTFGVTSGKLL 1380