BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023316
         (585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   244   8e-63
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   244   8e-63
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         243   2e-62
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   243   2e-62
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             241   6e-62

>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  244 bits (623), Expect = 8e-63
 Identities = 112/193 (58%), Positives = 147/193 (76%)
 Frame = -3

Query: 580  YLTSTRPDIVYGVRIISRFMESPHQSHLQAAKRILRYIQGTHDYGIFYSASHSCELVGYT 401
            YLT TRPDI+Y V ++SR+ME P  +H +AAKRILRYI+GT ++G+ YS +   +LVGY+
Sbjct: 1135 YLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYS 1194

Query: 400  NSDWAGDIEKRKSTSGYVFHLGSGVFSWSSKKQQVVALSIAEAEYIATAYCATQAVWLRR 221
            +SDW GD++ RKSTSG+VF++G   F+W SKKQ +V LS  EAEY+A   C   A+WLR 
Sbjct: 1195 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRN 1254

Query: 220  MLE*LNQKQKIPTKIVCDNKSAIALTKNPIFHGRSKHIDIKYHYIRELVKENEIVLEFFQ 41
            +L+ L+  Q+ PTKI  DNKSAIAL KNP+FH RSKHID +YHYIRE V + ++ LE+ +
Sbjct: 1255 LLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVK 1314

Query: 40   SSDQVVDIFTKPL 2
            + DQV DIFTKPL
Sbjct: 1315 THDQVADIFTKPL 1327


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  244 bits (623), Expect = 8e-63
 Identities = 112/193 (58%), Positives = 147/193 (76%)
 Frame = -3

Query: 580  YLTSTRPDIVYGVRIISRFMESPHQSHLQAAKRILRYIQGTHDYGIFYSASHSCELVGYT 401
            YLT TRPDI+Y V ++SR+ME P  +H +AAKRILRYI+GT ++G+ YS +   +LVGY+
Sbjct: 1103 YLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYS 1162

Query: 400  NSDWAGDIEKRKSTSGYVFHLGSGVFSWSSKKQQVVALSIAEAEYIATAYCATQAVWLRR 221
            +SDW GD++ RKSTSG+VF++G   F+W SKKQ +V LS  EAEY+A   C   A+WLR 
Sbjct: 1163 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRN 1222

Query: 220  MLE*LNQKQKIPTKIVCDNKSAIALTKNPIFHGRSKHIDIKYHYIRELVKENEIVLEFFQ 41
            +L+ L+  Q+ PTKI  DNKSAIAL KNP+FH RSKHID +YHYIRE V + ++ LE+ +
Sbjct: 1223 LLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVK 1282

Query: 40   SSDQVVDIFTKPL 2
            + DQV DIFTKPL
Sbjct: 1283 THDQVADIFTKPL 1295


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  243 bits (619), Expect = 2e-62
 Identities = 111/193 (57%), Positives = 146/193 (75%)
 Frame = -3

Query: 580  YLTSTRPDIVYGVRIISRFMESPHQSHLQAAKRILRYIQGTHDYGIFYSASHSCELVGYT 401
            YLT TRPDI+Y V ++SR+ME P  +H +AAKRILRYI+GT ++G+ YS +   +LVGY+
Sbjct: 1135 YLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYS 1194

Query: 400  NSDWAGDIEKRKSTSGYVFHLGSGVFSWSSKKQQVVALSIAEAEYIATAYCATQAVWLRR 221
            +SDW GD++ RKSTSG+VF++G   F+W SKKQ +V LS  EAEY+A   C   A+WLR 
Sbjct: 1195 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRN 1254

Query: 220  MLE*LNQKQKIPTKIVCDNKSAIALTKNPIFHGRSKHIDIKYHYIRELVKENEIVLEFFQ 41
            +L+ L+  Q+ PTKI  DNKSAIAL KNP+FH RSKHID +YHYIRE V + ++ LE+ +
Sbjct: 1255 LLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVK 1314

Query: 40   SSDQVVDIFTKPL 2
            + DQV D FTKPL
Sbjct: 1315 THDQVADFFTKPL 1327


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  243 bits (619), Expect = 2e-62
 Identities = 111/193 (57%), Positives = 146/193 (75%)
 Frame = -3

Query: 580  YLTSTRPDIVYGVRIISRFMESPHQSHLQAAKRILRYIQGTHDYGIFYSASHSCELVGYT 401
            YLT TRPDI+Y V ++SR+ME P  +H +AAKRILRYI+GT ++G+ YS +   +LVGY+
Sbjct: 1135 YLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYS 1194

Query: 400  NSDWAGDIEKRKSTSGYVFHLGSGVFSWSSKKQQVVALSIAEAEYIATAYCATQAVWLRR 221
            +SDW GD++ RKSTSG+VF++G   F+W SKKQ +V LS  EAEY+A   C   A+WLR 
Sbjct: 1195 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRN 1254

Query: 220  MLE*LNQKQKIPTKIVCDNKSAIALTKNPIFHGRSKHIDIKYHYIRELVKENEIVLEFFQ 41
            +L+ L+  Q+ PTKI  DNKSAIAL KNP+FH RSKHID +YHYIRE V + ++ LE+ +
Sbjct: 1255 LLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVK 1314

Query: 40   SSDQVVDIFTKPL 2
            + DQV D FTKPL
Sbjct: 1315 THDQVADFFTKPL 1327


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  241 bits (615), Expect = 6e-62
 Identities = 111/193 (57%), Positives = 146/193 (75%)
 Frame = -3

Query: 580  YLTSTRPDIVYGVRIISRFMESPHQSHLQAAKRILRYIQGTHDYGIFYSASHSCELVGYT 401
            YLT TRPDI+Y V ++SR+ME P  +H +AAKRILRYI+GT ++G+ YS +   +LVGY+
Sbjct: 1074 YLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYS 1133

Query: 400  NSDWAGDIEKRKSTSGYVFHLGSGVFSWSSKKQQVVALSIAEAEYIATAYCATQAVWLRR 221
            +SDW  D++ RKSTSG+VF++G   F+W SKKQ +V LS  EAEY+A   C   A+WLR 
Sbjct: 1134 DSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRN 1193

Query: 220  MLE*LNQKQKIPTKIVCDNKSAIALTKNPIFHGRSKHIDIKYHYIRELVKENEIVLEFFQ 41
            +L+ L+  Q+ PTKI  DNKSAIAL KNP+FH RSKHID +YHYIRE V + ++ LE+ +
Sbjct: 1194 LLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVK 1253

Query: 40   SSDQVVDIFTKPL 2
            + DQV DIFTKPL
Sbjct: 1254 THDQVADIFTKPL 1266