BLASTX nr result
ID: Coptis23_contig00023315
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00023315
(765 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 105 2e-62
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 105 2e-62
gb|ABF81447.1| NBS type disease resistance protein [Populus tric... 120 3e-62
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 105 5e-62
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 103 1e-61
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 105 bits (262), Expect(3) = 2e-62
Identities = 51/101 (50%), Positives = 72/101 (71%)
Frame = -1
Query: 762 DDGIFVSQRKYAQDVLERFRMESCKSIMTPVEHRLKLVKADTGEFVSPTYFKRLVGSLHY 583
D+GIF++Q YA++VL++F+M+ + TP+E +KL K + GE V PT FK LVGSL Y
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135
Query: 582 LTSTGPDIVYGVGIINRFMESPCHMSHLQVAKSTLCYIQGT 460
LT T PDI+Y VG+++R+ME P +H + AK L YI+GT
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPT-TTHFKAAKRILRYIKGT 1175
Score = 102 bits (253), Expect(3) = 2e-62
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = -2
Query: 452 GIFYSASRSCELVGYTNSDWAGNIEKRKNTSGYVFHIGS*VFSWSSKKQQVVALSTTKAE 273
G+ YS + +LVGY++SDW G+++ RK+TSG+VF+IG F+W SKKQ +V LST +AE
Sbjct: 1179 GLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAE 1238
Query: 272 YIAAAYCATQAVWLRRML*ELNQKQE 195
Y+AA C A+WLR +L EL+ QE
Sbjct: 1239 YVAATSCVCHAIWLRNLLKELSLPQE 1264
Score = 79.7 bits (195), Expect(3) = 2e-62
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = -3
Query: 187 PTKIVCDNKFAIALTKHPVFHGRNKHIDLKYHYICELVKESEIVLAFCLSDEQVANIFTK 8
PTKI DNK AIAL K+PVFH R+KHID +YHYI E V + ++ L + + +QVA+IFTK
Sbjct: 1266 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTK 1325
Query: 7 PL 2
PL
Sbjct: 1326 PL 1327
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 105 bits (262), Expect(3) = 2e-62
Identities = 51/101 (50%), Positives = 72/101 (71%)
Frame = -1
Query: 762 DDGIFVSQRKYAQDVLERFRMESCKSIMTPVEHRLKLVKADTGEFVSPTYFKRLVGSLHY 583
D+GIF++Q YA++VL++F+M+ + TP+E +KL K + GE V PT FK LVGSL Y
Sbjct: 1044 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1103
Query: 582 LTSTGPDIVYGVGIINRFMESPCHMSHLQVAKSTLCYIQGT 460
LT T PDI+Y VG+++R+ME P +H + AK L YI+GT
Sbjct: 1104 LTCTRPDILYAVGVVSRYMEHPT-TTHFKAAKRILRYIKGT 1143
Score = 102 bits (253), Expect(3) = 2e-62
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = -2
Query: 452 GIFYSASRSCELVGYTNSDWAGNIEKRKNTSGYVFHIGS*VFSWSSKKQQVVALSTTKAE 273
G+ YS + +LVGY++SDW G+++ RK+TSG+VF+IG F+W SKKQ +V LST +AE
Sbjct: 1147 GLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAE 1206
Query: 272 YIAAAYCATQAVWLRRML*ELNQKQE 195
Y+AA C A+WLR +L EL+ QE
Sbjct: 1207 YVAATSCVCHAIWLRNLLKELSLPQE 1232
Score = 79.7 bits (195), Expect(3) = 2e-62
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = -3
Query: 187 PTKIVCDNKFAIALTKHPVFHGRNKHIDLKYHYICELVKESEIVLAFCLSDEQVANIFTK 8
PTKI DNK AIAL K+PVFH R+KHID +YHYI E V + ++ L + + +QVA+IFTK
Sbjct: 1234 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTK 1293
Query: 7 PL 2
PL
Sbjct: 1294 PL 1295
>gb|ABF81447.1| NBS type disease resistance protein [Populus trichocarpa]
Length = 972
Score = 120 bits (300), Expect(3) = 3e-62
Identities = 60/103 (58%), Positives = 78/103 (75%)
Frame = -1
Query: 762 DDGIFVSQRKYAQDVLERFRMESCKSIMTPVEHRLKLVKADTGEFVSPTYFKRLVGSLHY 583
++GIFVSQ YA+D+LERF+MESC + TPVE+ ++L K+ G V PTYFK LVGSL Y
Sbjct: 224 EEGIFVSQSGYAKDILERFKMESCNPVSTPVENGVELRKSKVGN-VDPTYFKSLVGSLRY 282
Query: 582 LTSTGPDIVYGVGIINRFMESPCHMSHLQVAKSTLCYIQGTQD 454
LT T PDI+YGVG+++R+ME+P SHL AK L YI+GT +
Sbjct: 283 LTCTRPDILYGVGLVSRYMETP-DQSHLNAAKRILRYIKGTMN 324
Score = 91.3 bits (225), Expect(3) = 3e-62
Identities = 41/86 (47%), Positives = 62/86 (72%)
Frame = -2
Query: 452 GIFYSASRSCELVGYTNSDWAGNIEKRKNTSGYVFHIGS*VFSWSSKKQQVVALSTTKAE 273
G+FY++S+ LVGY++SDW ++++RK+T+G+VF +G F+WSSKKQ +V LS+ +AE
Sbjct: 326 GMFYTSSKDFNLVGYSDSDWGRDLDERKSTTGFVFFMGDTSFTWSSKKQSIVTLSSCEAE 385
Query: 272 YIAAAYCATQAVWLRRML*ELNQKQE 195
Y+AA ++WLR ML L QE
Sbjct: 386 YVAANSAVCHSIWLRNMLKFLGFPQE 411
Score = 75.1 bits (183), Expect(3) = 3e-62
Identities = 35/62 (56%), Positives = 47/62 (75%)
Frame = -3
Query: 187 PTKIVCDNKFAIALTKHPVFHGRNKHIDLKYHYICELVKESEIVLAFCLSDEQVANIFTK 8
PT I DN+ AIAL K+PV+H R+KHID ++H+I E VK E+ L C +++QVA+IFTK
Sbjct: 413 PTGIYIDNRSAIALAKNPVYHERSKHIDTRHHFIREHVKNEEVQLISCNTNDQVADIFTK 472
Query: 7 PL 2
PL
Sbjct: 473 PL 474
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 105 bits (262), Expect(3) = 5e-62
Identities = 51/101 (50%), Positives = 72/101 (71%)
Frame = -1
Query: 762 DDGIFVSQRKYAQDVLERFRMESCKSIMTPVEHRLKLVKADTGEFVSPTYFKRLVGSLHY 583
D+GIF++Q YA++VL++F+M+ + TP+E +KL K + GE V PT FK LVGSL Y
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135
Query: 582 LTSTGPDIVYGVGIINRFMESPCHMSHLQVAKSTLCYIQGT 460
LT T PDI+Y VG+++R+ME P +H + AK L YI+GT
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPT-TTHFKAAKRILRYIKGT 1175
Score = 102 bits (253), Expect(3) = 5e-62
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = -2
Query: 452 GIFYSASRSCELVGYTNSDWAGNIEKRKNTSGYVFHIGS*VFSWSSKKQQVVALSTTKAE 273
G+ YS + +LVGY++SDW G+++ RK+TSG+VF+IG F+W SKKQ +V LST +AE
Sbjct: 1179 GLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAE 1238
Query: 272 YIAAAYCATQAVWLRRML*ELNQKQE 195
Y+AA C A+WLR +L EL+ QE
Sbjct: 1239 YVAATSCVCHAIWLRNLLKELSLPQE 1264
Score = 78.2 bits (191), Expect(3) = 5e-62
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -3
Query: 187 PTKIVCDNKFAIALTKHPVFHGRNKHIDLKYHYICELVKESEIVLAFCLSDEQVANIFTK 8
PTKI DNK AIAL K+PVFH R+KHID +YHYI E V + ++ L + + +QVA+ FTK
Sbjct: 1266 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTK 1325
Query: 7 PL 2
PL
Sbjct: 1326 PL 1327
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 103 bits (258), Expect(3) = 1e-61
Identities = 50/101 (49%), Positives = 72/101 (71%)
Frame = -1
Query: 762 DDGIFVSQRKYAQDVLERFRMESCKSIMTPVEHRLKLVKADTGEFVSPTYFKRLVGSLHY 583
D+GIF++Q YA++VL++F+++ + TP+E +KL K + GE V PT FK LVGSL Y
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135
Query: 582 LTSTGPDIVYGVGIINRFMESPCHMSHLQVAKSTLCYIQGT 460
LT T PDI+Y VG+++R+ME P +H + AK L YI+GT
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPT-TTHFKAAKRILRYIKGT 1175
Score = 102 bits (253), Expect(3) = 1e-61
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = -2
Query: 452 GIFYSASRSCELVGYTNSDWAGNIEKRKNTSGYVFHIGS*VFSWSSKKQQVVALSTTKAE 273
G+ YS + +LVGY++SDW G+++ RK+TSG+VF+IG F+W SKKQ +V LST +AE
Sbjct: 1179 GLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAE 1238
Query: 272 YIAAAYCATQAVWLRRML*ELNQKQE 195
Y+AA C A+WLR +L EL+ QE
Sbjct: 1239 YVAATSCVCHAIWLRNLLKELSLPQE 1264
Score = 78.2 bits (191), Expect(3) = 1e-61
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -3
Query: 187 PTKIVCDNKFAIALTKHPVFHGRNKHIDLKYHYICELVKESEIVLAFCLSDEQVANIFTK 8
PTKI DNK AIAL K+PVFH R+KHID +YHYI E V + ++ L + + +QVA+ FTK
Sbjct: 1266 PTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTK 1325
Query: 7 PL 2
PL
Sbjct: 1326 PL 1327